PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g51045.1.p
Common NameBRADI_1g51045
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 414aa    MW: 44530.8 Da    PI: 8.412
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g51045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483e-1579138155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Bradi1g51045.1.p  79 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 138
                       789******************888855566447*************************98 PP
2AP252.31.4e-16181232155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Bradi1g51045.1.p 181 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 232
                       89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-1679147IPR016177DNA-binding domain
PfamPF008474.3E-1279138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1580146IPR001471AP2/ERF domain
SMARTSM003807.7E-2580152IPR001471AP2/ERF domain
PROSITE profilePS5103219.4880146IPR001471AP2/ERF domain
PRINTSPR003673.1E-58192IPR001471AP2/ERF domain
PfamPF008475.2E-12181232IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18181242IPR016177DNA-binding domain
CDDcd000181.19E-23181242No hitNo description
Gene3DG3DSA:3.30.730.103.2E-18182241IPR001471AP2/ERF domain
SMARTSM003801.6E-26182246IPR001471AP2/ERF domain
PROSITE profilePS5103218.953182240IPR001471AP2/ERF domain
PRINTSPR003673.1E-5222242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEAYCSTLVK DELINGGGGG SAGGMRYCEA APRVSPPVAI KSVKRRKREP PAVSGMTTVS  60
GGGKDGDKSA GNAAAKRSSR FRGVSRHRWT GRFEAHLWDK GTWNPTQKKK GKQVYLGAYN  120
EEEAAARAYD LAALKYWGPT TYTNFPVVDY EKELKVMQGV SREEYLASIR RKSNGFSRGV  180
SKYRGVARHH HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD  240
LSSYIRWLKP NSTINTNTPA AELAILGGGG TPAALITPPP TMHVPRLLPP LVKGRGSSIA  300
DDVSAGSCVF GGPSPSPSPT TTALSLLLRS SVFQELVAQQ QPPSTVDDDD DIGGHAAVSD  360
AAQRAAEENE ESFGEVLYGA GEGEAATAFS CSMYELGLDD NFARIEESLW GCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KSVKRRK
2104112PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g51045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599890.0EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313164.10.0ethylene-responsive transcription factor WRI1
TrEMBLA0A0Q3S3T50.0A0A0Q3S3T5_BRADI; Uncharacterized protein
STRINGTraes_7AS_A70A185F1.11e-165(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-82AP2 family protein