PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g50597.1.p
Common NameBRADI_1g50597, LOC100842886
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 352aa    MW: 38023.2 Da    PI: 9.0236
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g50597.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.5e-2498142145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Bradi1g50597.1.p  98 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 142
                       79****************************************986 PP
2QLQ62.98.3e-222660236
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                       FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++i+
  Bradi1g50597.1.p 26 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPIR 60
                      5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-122561IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4682661IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-162760IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.34698142IPR014977WRC domain
PfamPF088794.0E-2199141IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLSSAAAMGM GGGYHHHQQQ QRGAAVFTAA QWAELEQQAL IYKYLMAGVP VPPDLLLPIR  60
PHSAAAAAFS FANPAASPFY HHHHPSMSYY AYYGKKLDPE PWRCRRTDGK KWRCSKEAHP  120
DSKYCERHMH RGRNRSRKPV ESKTPSPAHQ SQTQLSAVTS TARDAEPLQS LGVGAKTHGL  180
SLGGAGSSQM HVDASSYGGK YSVGAKSDVG ELGFFSGASG NTRGFTIDSP ADSPWHSMPS  240
SVPPYQLSKA RDSGLLQGGG FSYSHFEPSQ GLGQVTIASL SQEQERRSFS GGGGGGGLMA  300
NVKQENQALR PFFDEWPGRR DSWSEMDDER SNGTSFSTTQ LSISIPMPRC D*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g50597.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764040.0AK376404.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557172.10.0growth-regulating factor 5 isoform X1
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A0Q3JPZ70.0A0A0Q3JPZ7_BRADI; Uncharacterized protein
STRINGBRADI1G50597.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]