PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g50256.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 191aa    MW: 21771.7 Da    PI: 4.1815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g50256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-1751140198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv       ++ +l++p +f ++ +++  ++  + l+ +sg++W+v+l    +  +  +  GWkeF ++n+++ g f+vF ++g+s+f   
  Bradi1g50256.1.p  51 FFKVI--LPGQSTEQLTIPPPFYKHLENE--SPGVVFLRGPSGNKWRVEL--VANNMELCFVHGWKEFLSDNRIQPGYFLVFCYNGQSQF--S 135
                       67777..66777788********655655..6668***************..88888999999**********************99999..9 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+vf+
  Bradi1g50256.1.p 136 VTVFD 140
                       99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2344141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2245141IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.39449142IPR003340B3 DNA binding domain
CDDcd100171.65E-2149140No hitNo description
PfamPF023623.7E-1551140IPR003340B3 DNA binding domain
SMARTSM010191.1E-1351142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MENEKERERV DAEEQEKDLH EDRERKEQMA LEEQNEKNEN GDTSKNTFPR FFKVILPGQS  60
TEQLTIPPPF YKHLENESPG VVFLRGPSGN KWRVELVANN MELCFVHGWK EFLSDNRIQP  120
GYFLVFCYNG QSQFSVTVFD SAAHEAPYAF LSRPSNDRVT EEDEGMGTNA DDTDPEEEGT  180
DNMPAENGGT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g50256.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229964.11e-140B3 domain-containing protein Os11g0197600
TrEMBLA0A2K2DQQ11e-139A0A2K2DQQ1_BRADI; Uncharacterized protein
STRINGBRADI1G48690.13e-57(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-20B3 family protein