PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g50237.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 843aa MW: 95909.9 Da PI: 4.2645 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.6 | 1.1e-18 | 157 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv ++++l +p+ f ++ ++ e+s ++l+d sg++W+v l +s + + +GW++F +++++ +gDf+vF+++g+s+f Bradi1g50237.2.p 157 FFKVV--MPGESTQQLKIPRAFK-KYLEN-ESSGVVSLRDASGNTWRVGL--VANSMELSFVRGWERFFSDHRIHVGDFLVFRYNGQSQF--S 241 77777..44666778*******6.88444.46679***************..9********************************99999..7 PP EEEE-S CS B3 94 vkvfrk 99 v vf + Bradi1g50237.2.p 242 VLVFGR 247 777765 PP | |||||||
2 | B3 | 48.2 | 1.9e-15 | 725 | 818 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fk+++ s v ++ +++p + +++++k +++++tl d++g++W+v + y r++ ++ +++GW F n+L+e D++vF++ ++s+ Bradi1g50237.2.p 725 FKAMKYSEVYTTYFMIIPEILV-KNSLPK-KDMQMTLWDPQGKTWDVSYVYqsRGGVCSAAFATGWGAFSVHNNLEEWDVCVFEVLDSSNI-- 813 6889999999999999999998.887775.789****************997677777799***********************6654544.. PP EEEEE CS B3 93 vvkvf 97 +v+v+ Bradi1g50237.2.p 814 KVHVH 818 66665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-24 | 151 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-21 | 152 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.29E-20 | 155 | 245 | No hit | No description |
PROSITE profile | PS50863 | 14.522 | 155 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-16 | 157 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-12 | 157 | 248 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 719 | 819 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.72E-18 | 720 | 819 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.182 | 724 | 821 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-5 | 724 | 821 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.91E-18 | 725 | 819 | No hit | No description |
Pfam | PF02362 | 2.0E-13 | 725 | 819 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 843 aa Download sequence Send to blast |
MVSSMQNVKV KEEKCNSMEN EKEMNMKEQR GRVNTQKAKK NKEEEQRNEE KGRLGSKTEM 60 MIEKEQRDMM DKEKAKKDKE EEQRKKEEKE REGCQLRETE EKKKEKKQRE RMDMEKETKD 120 KEDEQEKEVH EYRERKDKQY HERNEEEETT ENTFHHFFKV VMPGESTQQL KIPRAFKKYL 180 ENESSGVVSL RDASGNTWRV GLVANSMELS FVRGWERFFS DHRIHVGDFL VFRYNGQSQF 240 SVLVFGRSGC EVECAFLPQS YNDWVIEDDE GSMGINVDGT DPHEEDPRNM AKEKDGGDID 300 MNAGGTDLTR EDVGYTLAEG DDKVDMHTNR DVNNPQEEDA GNMAEENDGM DLDTNVGATN 360 LLEEDPRYTL AGHDKVDTGI NTYVTNPQEQ DAGNMAKEND GGGMGTNAGG TDVMEEDVGY 420 ALAKYDDKVD MDTSIDVTNT QELDACNVAG ENVGEDMDTN AHRTDLMDDQ DAGYALAEDD 480 KGDMDTIIDV TIPQKEDIVG AKSKASEEEE GNDRPMGRDD ALDTLQEKDV DGITNYPHGT 540 PQKEEYANYA HGNPPKEEEE EEEEENDDDD DVDVPIDDDE DDDDDDDDDD DDDSDTDGFG 600 IRNNRYRKID DIFAECGRLE AKKRKAMGKR PATPLSSSYK VASSSNANVK AVETNTMVGS 660 IVPVRSRFDW TLFNESNNVP QLGKVFAKVQ RVPEVTSQRR AVIEEEVEYA IEKASHFLSQ 720 RSFSFKAMKY SEVYTTYFMI IPEILVKNSL PKKDMQMTLW DPQGKTWDVS YVYQSRGGVC 780 SAAFATGWGA FSVHNNLEEW DVCVFEVLDS SNIKVHVHRV VCEITPYIQR PPQLDLNSRS 840 SC* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g50237.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314039.1 | 0.0 | probable ATP-dependent helicase PF08_0048 | ||||
TrEMBL | A0A2K2DQQ0 | 0.0 | A0A2K2DQQ0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G50240.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49894 | 2 | 2 | Representative plant | OGRP2051 | 14 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06220.1 | 1e-13 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g50237.2.p |