PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g50057.1.p | ||||||||
Common Name | BRADI_1g50057, SWN7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 416aa MW: 44463.2 Da PI: 7.3216 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.5e-50 | 11 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPt+eel+++yL+kkv++ +++l +vi++vd++k+ePwd+++ ++ + +++wy Fs++dkky+tg+r+nrat++g+Wkatg+dk Bradi1g50057.1.p 11 VPPGFRFHPTEEELLTYYLAKKVASCRIDL-DVIPDVDLNKLEPWDIQErcRIGTgPQSDWYLFSHKDKKYPTGTRTNRATAAGFWKATGRDK 102 69****************************.9***************953444442445********************************** PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ ++ ++g++ktLvfykgrap+g+k+dW+mheyrl Bradi1g50057.1.p 103 PIYSSssgsGTGKIGMRKTLVFYKGRAPHGTKSDWIMHEYRL 144 ****977776677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-56 | 7 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.102 | 11 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-26 | 12 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASCRIDL DVIPDVDLNK LEPWDIQERC 60 RIGTGPQSDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYSSSSG SGTGKIGMRK 120 TLVFYKGRAP HGTKSDWIMH EYRLHDNAQN HHSSPGAASS SPIRGGDQSA AQQEEGWVIC 180 RVFKKKNLIC CNNNNNQALA SHPQISSNNN KQPSPSRSCS AVSDDHHAAS RAAAAQMLHH 240 YSAGGSGDVD THTLDHILRY MGSNSGKQES KPAPLTSACS LPNMDQYSLV NGGGGGTLYD 300 KFMKLPPLEH VVVSGSGGGL LQLPPPTPQG SQYGGADCWA DTLAAYELNG GLSDNDVDGS 360 TKTTNGGMST PGCFFVAEQH HQHGHGGGGD GDLWSLARSS VSTLHADLAT AMDNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-45 | 11 | 187 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g50057.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ693428 | 0.0 | JQ693428.1 Brachypodium distachyon SWN7 (SWN7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266835.1 | 0.0 | uncharacterized protein LOC100830276 | ||||
TrEMBL | I1H1A1 | 0.0 | I1H1A1_BRADI; SWN7 | ||||
STRING | BRADI1G50057.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 5e-82 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g50057.1.p |
Entrez Gene | 100830276 |
Publications ? help Back to Top | |||
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