PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g50057.1.p
Common NameBRADI_1g50057, SWN7
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 416aa    MW: 44463.2 Da    PI: 7.3216
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g50057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.5e-50111441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPt+eel+++yL+kkv++ +++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat++g+Wkatg+dk
  Bradi1g50057.1.p  11 VPPGFRFHPTEEELLTYYLAKKVASCRIDL-DVIPDVDLNKLEPWDIQErcRIGTgPQSDWYLFSHKDKKYPTGTRTNRATAAGFWKATGRDK 102
                       69****************************.9***************953444442445********************************** PP

               NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++s+    ++ ++g++ktLvfykgrap+g+k+dW+mheyrl
  Bradi1g50057.1.p 103 PIYSSssgsGTGKIGMRKTLVFYKGRAPHGTKSDWIMHEYRL 144
                       ****977776677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-567185IPR003441NAC domain
PROSITE profilePS5100555.10211185IPR003441NAC domain
PfamPF023658.1E-2612144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASCRIDL DVIPDVDLNK LEPWDIQERC  60
RIGTGPQSDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYSSSSG SGTGKIGMRK  120
TLVFYKGRAP HGTKSDWIMH EYRLHDNAQN HHSSPGAASS SPIRGGDQSA AQQEEGWVIC  180
RVFKKKNLIC CNNNNNQALA SHPQISSNNN KQPSPSRSCS AVSDDHHAAS RAAAAQMLHH  240
YSAGGSGDVD THTLDHILRY MGSNSGKQES KPAPLTSACS LPNMDQYSLV NGGGGGTLYD  300
KFMKLPPLEH VVVSGSGGGL LQLPPPTPQG SQYGGADCWA DTLAAYELNG GLSDNDVDGS  360
TKTTNGGMST PGCFFVAEQH HQHGHGGGGD GDLWSLARSS VSTLHADLAT AMDNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-451118715170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g50057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6934280.0JQ693428.1 Brachypodium distachyon SWN7 (SWN7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266835.10.0uncharacterized protein LOC100830276
TrEMBLI1H1A10.0I1H1A1_BRADI; SWN7
STRINGBRADI1G50057.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.15e-82NAC family protein
Publications ? help Back to Top
  1. Valdivia ER, et al.
    Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon.
    J. Exp. Bot., 2013. 64(5): p. 1333-43
    [PMID:23386682]