PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g48770.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 364aa MW: 38230.3 Da PI: 6.3869 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.8 | 9.3e-28 | 121 | 181 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g++fpr+YYrCt++ gCp++++v+rs+ d v+++tY+g H+++ Bradi1g48770.3.p 121 DDGFSWRKYGQKDILGAKFPRGYYRCTYRtaqGCPATRQVQRSDADLAVFDVTYQGAHTCH 181 8**************************998899**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-27 | 113 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-24 | 118 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-40 | 120 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-26 | 121 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.573 | 121 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MQEGGGGEMQ VLLSILAEGE EQARRLLLHD GDGKECCRAV AGQLGRTLGK AMAVAKAIQA 60 AGGAASAGTD DRSDSPRSAD ESSAAQVQVQ ERQSVCKRRK GLPKWTEKFR IPDTNLEYTP 120 DDGFSWRKYG QKDILGAKFP RGYYRCTYRT AQGCPATRQV QRSDADLAVF DVTYQGAHTC 180 HQINQRHPVP VPVPAPHPPP SAHAHGGIHP PPPPQNPDLQ LLATFKDGLK VETDHGPPAP 240 TSSFQIHGLH HGASFPPFPY AAAAAGFPSS PGFVSPGPAT APAAAGGSGY FSSAASELGA 300 VVSAATSSAA AAVDPAGGFE DYPLFQYDEY HQLQQDDLDP DLQFPAMFGG HPSASSSSPG 360 QQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-19 | 122 | 190 | 18 | 79 | Disease resistance protein RRS1 |
5w3x_D | 5e-19 | 122 | 190 | 18 | 79 | Disease resistance protein RRS1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g48770.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757278.1 | 0.0 | probable WRKY transcription factor 2 | ||||
TrEMBL | A0A2K2DQD7 | 0.0 | A0A2K2DQD7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G48770.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13340 | 27 | 30 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-36 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g48770.3.p |