PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48625.1.p
Common NameBRADI_1g48625, LOC104582240
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 290aa    MW: 30210.9 Da    PI: 4.3784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48625.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1993143256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp     +  +r++lg+f+taeeAa  ++ a+++l+g+
  Bradi1g48625.1.p  93 KYRGVRFRH-WGKYAAEIRDP-----HsrARVWLGTFDTAEEAAMVYDSAALRLRGA 143
                       8********.**********7.....335**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-3092151IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2193151IPR016177DNA-binding domain
PROSITE profilePS5103222.69593150IPR001471AP2/ERF domain
SMARTSM003801.7E-3793156IPR001471AP2/ERF domain
PfamPF008473.7E-1293142IPR001471AP2/ERF domain
CDDcd000187.01E-3193151No hitNo description
PRINTSPR003671.6E-994105IPR001471AP2/ERF domain
PRINTSPR003671.6E-9116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKQEQIDQAA AFKAMPPRIL RISCEVSCEK DPDVTDSSDD DVDSVVLRLP LPALPSSSAA  60
APAASGVIGA AKKRRPADAG GASGVPMAAG VRKYRGVRFR HWGKYAAEIR DPHSRARVWL  120
GTFDTAEEAA MVYDSAALRL RGASAVTNFP AMPPPSPSTA GDQSSDDSQF SSSPASVFRP  180
LIPPPKLEPL AKAAPNKPNF SSCGGLLGDD DPCCGSGGFS TFLWPDVEDC MFAAGILPGV  240
TDGDDGMLSR LEGYVTAAGE PVTASLADLG ELPMWSEVDG LFFSDDATT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1992150463ATERF1
3gcc_A1e-1992150463ATERF1
5wx9_A2e-1981150472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48625.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229938.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A0Q3L8N10.0A0A0Q3L8N1_BRADI; Uncharacterized protein
STRINGTRIUR3_07811-P16e-44(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-27cytokinin response factor 4