PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48520.1.p
Common NameBRADI_1g48520, LOC100824576
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26133.5 Da    PI: 7.8993
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  Bradi1g48520.1.p  9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59
                      79***********************************************96 PP
2K-box93.14.9e-318217210100
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + +++ s +qe+ kLk ++e Lq++qR+llGedL++Ls+keL+qLe+q+e slk+iRs+K++  l+q+ el++ke++lq+ nk+Lrkk++e
  Bradi1g48520.1.p  82 TPETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLGPLSMKELEQLENQIEISLKHIRSTKSQQSLDQLFELKRKEQQLQDVNKDLRKKIQE 172
                       3344557789*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.039161IPR002100Transcription factor, MADS-box
CDDcd002651.02E-43278No hitNo description
SuperFamilySSF554557.19E-33289IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.27286176IPR002487Transcription factor, K-box
PfamPF014866.7E-2688171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS  60
SCMYKTLERY RNCNSNSEAT ATPETELSNY QEYLKLKTRV EFLQTTQRNL LGEDLGPLSM  120
KELEQLENQI EISLKHIRST KSQQSLDQLF ELKRKEQQLQ DVNKDLRKKI QETSAENVLH  180
MSCQDVGPSG STGHTNQANQ QELFHPSVCD PSLHIGYQAY MDHLNND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-248517016101Developmental protein SEPALLATA 3
4ox0_B3e-248517016101Developmental protein SEPALLATA 3
4ox0_C3e-248517016101Developmental protein SEPALLATA 3
4ox0_D3e-248517016101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693030.0KF469303.1 Brachypodium distachyon MADS-box transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288306.11e-169MADS-box transcription factor 5-like
SwissprotA2Y9P01e-137MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-137MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLI1H0S11e-167I1H0S1_BRADI; MADS-box transcription factor 7
STRINGBRADI1G48520.11e-168(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.12e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  3. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]