PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48400.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 333aa    MW: 36561.8 Da    PI: 7.0467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.5e-16111157455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Bradi1g48400.1.p 111 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 157
                       6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.87E-18101161No hitNo description
SuperFamilySSF474592.09E-20104167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-20104167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.063107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-14111157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMEDFEGGRG AVRELVLMQQ ERRRRREEEE DELRRQMFGP VVGGAAAFHS ASALAQHHHQ  60
QQQQQAAAAD CGELGGGFYE SEAGGSSEPE PHSSERPRGG SGSKRTRAAE VHNLSEKRRR  120
SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLSMRNGVY LNPSYLSGAL  180
EPMQASQMFA ALGVGGRNVT AANPGGVVPP VNQNTGAHHS FDPMNSPPQN QQPPLVLPSC  240
PNATIPEPSF HLGTSQSHLR PFQLPESSEM VFRGEIMPKH QITLAQDRAN LPGNKMDSVR  300
QEPPMSNTDH FDGCSRSKEH PQDIIPTNTR HA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026ERRRRRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561052.20.0transcription factor SPATULA
RefseqXP_014752502.10.0transcription factor SPATULA
TrEMBLA0A2K2DQA80.0A0A2K2DQA8_BRADI; Uncharacterized protein
STRINGBRADI1G48400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-38bHLH family protein