PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g48320.1.p | ||||||||
Common Name | BRADI_1g48320, LOC100845753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 18748.2 Da PI: 10.4839 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.6e-17 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g Bradi1g48320.1.p 43 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 92 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 42 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 43 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.972 | 43 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-37 | 43 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.76E-26 | 43 | 102 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-22 | 43 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.6E-12 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-12 | 82 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
METEAATAFY HQPPPAVPAP MPLPAKAPSG TGGAGRGAAA ARQYRGVRMR KWGKWVAEIR 60 EPNKRSRIWL GSYSTAVAAA RAYDTAVFYL RGRSARLNFP DQLDGATAAL KLEENGGLTA 120 AAIRKKAAEV GARVDALHSG IGCGAPPPPS PSPSQRRRTK YPDLNREPTP DTDDGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 32 | 104 | 4 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g48320.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361937 | 1e-121 | AK361937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227995.1 | 1e-124 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | O22174 | 2e-42 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | I1H0P6 | 1e-123 | I1H0P6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G48320.1 | 1e-124 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 2e-30 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g48320.1.p |
Entrez Gene | 100845753 |
Publications ? help Back to Top | |||
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