PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g48002.1.p | ||||||||
Common Name | BRADI_1g48002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 31904.4 Da PI: 4.7802 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.7e-07 | 140 | 174 | 13 | 47 |
HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 vd+ + +G g+Wk I++++ ++Rt+ q+ s+ qk+ Bradi1g48002.1.p 140 VDGLRAFGRGDWKNISKYFVTTRTPVQVSSHAQKF 174 899999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.74E-4 | 133 | 175 | No hit | No description |
SuperFamily | SSF46689 | 7.99E-9 | 134 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-7 | 135 | 177 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.6E-4 | 138 | 177 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDPKLHQEWT SFEVQEARSL IARLSINMID SYDADEKNKV HNHIVDALHG LFPWKTNEQV 60 TDFYVTLYAE MHMMQGQEDS HAGGGGMHTA CALPNHVNGS FGVPEEESGC ANGAQGVCAM 120 GDLAANSVFM VPEEEGEENV DGLRAFGRGD WKNISKYFVT TRTPVQVSSH AQKFFRRLKN 180 RALSNTQRHS INDDVDPYYA NTLTSESGSG AGQALTFTGL IHDPSIGLEA PTSSFVTLDN 240 IAQLLYSQQV VQQPLWSEQQ MMGSGAATMD GVGNFEPPCR QGSTYLPPRN G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g48002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229928.1 | 0.0 | uncharacterized protein LOC104582232 | ||||
TrEMBL | A0A0Q3NP91 | 0.0 | A0A0Q3NP91_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 | Representative plant | OGRP2767 | 5 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09450.1 | 3e-15 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g48002.1.p |