PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g47563.1.p
Common NameBRADI_1g47560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 421aa    MW: 44933.6 Da    PI: 5.7399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g47563.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.4e-12371418347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +W+  E+e l ++v q+G+ +Wk I  + +    gRt+ ++k++w++ 
  Bradi1g47563.1.p 371 KWSSVEEETLRKGVDQFGSSNWKDILIHNPdvfIGRTAVDLKDKWRNM 418
                       8*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-12364420IPR009057Homeodomain-like
PROSITE profilePS5129416.027364420IPR017930Myb domain
SuperFamilySSF466891.09E-13366419IPR009057Homeodomain-like
SMARTSM007170.0018368420IPR001005SANT/Myb domain
CDDcd116601.33E-18370420No hitNo description
PfamPF002499.2E-10371418IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPRLTPADAS LILDHVVGDP STPAAAANAL LAELPFPSRP TRRLLRSVLL RRLGSDPVSP  60
AALDTLQLLA SLPTPAPAIA AAHLAVAAFL AASAPDFDAA AGALFARPDG RARRAVDEGG  120
DPALVSPEAV AVADQFEAAV GNAFSQSVLR GLWGGRAAAE ERVRELLVAE WAAIGPSQLE  180
VAAERIVGDG AVETWRAAEE SIRAKYRMLA GEERAREILS RLEEPTSNVN PISTPEVHKV  240
LDALKSSCAD LHSAVEDPLP AAKAAADEVL AARMDKAVDI NAEEVNNQAA SCSAAAGPSA  300
LNNQGEASRK GTLSSLMDWN STARTFQWED SLDPEGSRSQ SHIPHLPSPR RNQVSPLQLA  360
DNKAKRRRAR KWSSVEEETL RKGVDQFGSS NWKDILIHNP DVFIGRTAVD LKDKWRNMMR  420
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g47563.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564207.10.0uncharacterized protein LOC100830298 isoform X1
TrEMBLI1H0F40.0I1H0F4_BRADI; Uncharacterized protein
STRINGBRADI1G47562.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-13TRF-like 5