PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g47480.1.p | ||||||||
Common Name | BRADI_1g47480, LOC100825990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 16778.6 Da PI: 7.7315 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.7e-19 | 7 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+Wv+eIr+p + +r++lg+f tae+Aa+a+++a++ + g Bradi1g47480.1.p 7 RFRGVRQRH-WGSWVSEIRHP-----HlkTRIWLGTFETAEDAARAYDEAARIMCG 56 69******9.**********8.....556**********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.51E-28 | 6 | 63 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-20 | 7 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 7 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.875 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-34 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 7 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MARPQQRFRG VRQRHWGSWV SEIRHPHLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR 60 TNFSSTGAGA GDPPPSSSFL SPALVAKLHR FNMASSTSQA ASAAAQRDHK QDGSSTGTSA 120 AAAGWSGGFL EEQYVEQMIE ELLDSNFSME ISY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-15 | 6 | 63 | 4 | 62 | ATERF1 |
3gcc_A | 8e-15 | 6 | 63 | 4 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g47480.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974942 | 2e-70 | EU974942.1 Zea mays clone 461426 ethylene response factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561000.1 | 1e-110 | ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 2e-49 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | I1H0E3 | 1e-109 | I1H0E3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G47480.1 | 1e-110 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 5e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g47480.1.p |
Entrez Gene | 100825990 |
Publications ? help Back to Top | |||
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