PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g47465.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 473aa    MW: 54788.8 Da    PI: 9.574
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g47465.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-1734115190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn+YAk++GF +++s+ +        ++r ++C+kegk +++ ++  ++rr ra++++gCka++ vk++ dg  ++++++ eHnH+l+
  Bradi1g47465.1.p  34 EFYNAYAKHTGFGLKRSQRNA-------YRRYMRCTKEGKYTTSVHD-GERRRGRASKKIGCKAHMGVKMNADGGCVIKSIHFEHNHQLT 115
                       6*************9987444.......69999**********9999.99**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-1434115IPR004330FAR1 DNA binding domain
PfamPF105518.2E-9225272IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MIFFFAKNLQ APELLENMIP VIGQHFRTFN EAFEFYNAYA KHTGFGLKRS QRNAYRRYMR  60
CTKEGKYTTS VHDGERRRGR ASKKIGCKAH MGVKMNADGG CVIKSIHFEH NHQLTLSPSM  120
LVFLHSHKRV NPTLQDYIKD LQLSNVKHVN IMSLLTRLSG GHDKLGCHNR DVLNTKAKNA  180
RKESADDVQK LFKFFDDMTA ENENFYYDLH ANASCRAAYA DFGDCITFDT TYKSNKFHLP  240
LAVFVGVSNH LLSSIFRVVL MGDESVDSFK WCPSMAKAIP QIFPRSLHKL CRWHIMRKHK  300
DSLGKLYKLF PDLKDQLAAV PTHPLMPTEL EAAWHELVNK YNLHDVNVMV NLWNDSTYWK  360
DVFCARMTST QRSESMNHVL KKGFMREQHD LHIFAQQVNN CIQRRLESEA AEATASMGVM  420
KPLTWYGFEA QILEHYTRAV YGVFWERQFH STGFRIKTSP QNTTEFLVHH YN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g47465.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154904.11e-157protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DQ080.0A0A2K2DQ08_BRADI; Uncharacterized protein
STRINGBRADI5G03570.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-52FAR1-related sequence 5