PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g47400.1.p
Common NameBRADI_1g47400, LOC100828175
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 655aa    MW: 71113.3 Da    PI: 6.4333
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g47400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.75.5e-28217270155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +pr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Bradi1g47400.1.p 217 RPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 270
                       59*******************.********************************8 PP
2Response_reg77.16.2e-26281361109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ + 
  Bradi1g47400.1.p  28 VLAVDDDPVCLKVLETLLRRCQY-HVTATNQAITALKLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGIT 118
                       799********************.***************99999********************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ +eel++
  Bradi1g47400.1.p 119 HGACDYLLKPVRIEELRN 136
                       ****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1935654IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.5E-4125149No hitNo description
SuperFamilySSF521721.14E-3425150IPR011006CheY-like superfamily
SMARTSM004482.2E-3026138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.95627142IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2328136IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.16E-2629141No hitNo description
Gene3DG3DSA:1.10.10.601.8E-29214275IPR009057Homeodomain-like
PROSITE profilePS5129410.886214273IPR017930Myb domain
SuperFamilySSF466895.2E-19215274IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-25218270IPR006447Myb domain, plants
PfamPF002492.8E-6219269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MLSDAMMMEA RKGLIAREMD QFPVGMRVLA VDDDPVCLKV LETLLRRCQY HVTATNQAIT  60
ALKLLRENKD MFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSVNGET KTVLKGITHG  120
ACDYLLKPVR IEELRNVWQH VVRRKFSNRE PSNLDFCKEF SKPPSADSYH GLNQVTCGSS  180
DQSSRACKKR KELHSEEEDE GEDNDAQEND EPSASKRPRV VWSVELHRKF VAAVNHLGID  240
KAVPKRILEL MNVEKLTREN VASHLQKYRL YLRRLSAVAS QQASIAAAFG GRDPFLHMGA  300
FEGLHSYQTF APSVALSSFN PHGLLSGAGA TAFGLQELAP SKAIQCATSN GAVGHCAGDT  360
NKFHIVSLQE NQPASLTQGL TTSLGLPQLQ QKWIHQETND LSSVFSGSAL ANTMSGTLQR  420
VASSSLPPEE LLECRHSQVG VHPSIRLPSA SSGLVERSAG VSTNLQDSSI SQQGALPING  480
GFSIDKLPLH CTFDSAGATK LDASFVAPEK SIDPKGKFSE RIAVCPSDSL VAANNAKGGA  540
SSSGSTMRLS PDTERHSKYL QFGVASNSTH RMDGRQDHIH NQRLNGSFSY NGDASVPEQT  600
NMYDLGITKL QGGFNSSSCN FDGLLNSIIK VESDDVPFSD SDLGCELFPL GACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-25213276164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g47400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564200.10.0two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLI1H0D50.0I1H0D5_BRADI; Two-component response regulator
STRINGBRADI1G47400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-107response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]