PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g46690.3.p
Common NameBRADI_1g46690, LOC100840803
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 352aa    MW: 38519.7 Da    PI: 4.5035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g46690.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-18110159255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp++     r++lg++ +aeeAa+a++a +++++g
  Bradi1g46690.3.p 110 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSAEEAARAYDAEARRIRG 159
                       69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-30110169IPR001471AP2/ERF domain
SMARTSM003809.9E-35110173IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-21110168IPR016177DNA-binding domain
CDDcd000184.62E-31110168No hitNo description
PROSITE profilePS5103223.762110167IPR001471AP2/ERF domain
PRINTSPR003673.5E-10111122IPR001471AP2/ERF domain
PfamPF008473.9E-11111159IPR001471AP2/ERF domain
PRINTSPR003673.5E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCGGAILSDI IPPPRRVTDG HLWPAEKKRG KGVGGGRPRR VPEEEFEEEE FEAGFEGFEE  60
ELGEVEVGFG DEIKPSLASR NGSAGDGLNA TSAGADGRAS GSSKRKRKNQ FRGIRRRPWG  120
KWAAEIRDPR KGVRVWLGTY NSAEEAARAY DAEARRIRGK KAKVNFPEEA PVTSQRHAEP  180
TFVKVSEFNT EEKPIVNTMG NTNAHSYPVV DYSLHEPFLQ PQNMSFMPVM NAVEAPFMNL  240
SSDQGSNSFS CSDFSWENDI KTPDITSVLA SIPTSTEVDE SAFLQNNANN AALPPVMGNA  300
NVDIADLEPY MKFLMDSGSD ESIDSMLSCD GSPDAVDLWT FDDMPMSAGF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-201101741479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103117KRKRKNQFRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g46690.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564157.10.0ethylene-responsive transcription factor 1 isoform X1
SwissprotQ6K7E61e-112ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLI1H0410.0I1H041_BRADI; Uncharacterized protein
STRINGBRADI1G46690.30.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.32e-32related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]