PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g46427.1.p
Common NameLOC100835287
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 322aa    MW: 34979.9 Da    PI: 8.6464
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g46427.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-2491135145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr++ + +k+C+rH+hrg++rsrk++e+
  Bradi1g46427.1.p  91 DPEPGRCRRTDGKKWRCSREAFGESKYCDRHMHRGKNRSRKPVEP 135
                       79****************************************996 PP
2QLQ53.76.4e-191751236
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                       FTa+Q+ +L++Q+l+yKy+aa+ +vP+eLl++ +
  Bradi1g46427.1.p 17 LFTASQWRELEQQALIYKYMAAGSQVPHELLLPFR 51
                      5******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-81652IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.7361752IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.8E-131849IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.25191135IPR014977WRC domain
PfamPF088791.2E-1992134IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMLRGAQGGG GGGGRCLFTA SQWRELEQQA LIYKYMAAGS QVPHELLLPF RHAAAVDTAP  60
SLACFPPPSH PSLGWGCYGP AAMQYGRRAE DPEPGRCRRT DGKKWRCSRE AFGESKYCDR  120
HMHRGKNRSR KPVEPPTPPS SSSSSSYRPS ALSISPPTPA DAAPNSNSSY GHQFLRPGPS  180
SVSPLQLHLD APSPPPSYHR YAQPQPPQYS TSSFFPAGHG YGCEFKPAAM LEQHEEALLA  240
RRRLGADLSL DKPDAATSEG ENKTKSLRRF LDEWPRGDNN GDGRSWMDET TQLSMSIPAA  300
SSPAADLAIA ASRYHHHNGN E*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g46427.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560956.10.0growth-regulating factor 2
SwissprotQ6AWY71e-91GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLI1H0030.0I1H003_BRADI; Uncharacterized protein
STRINGBRADI1G46427.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-36growth-regulating factor 5