PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g46120.1.p
Common NameBRADI_1g46120, LOC100828853
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 236aa    MW: 24429.1 Da    PI: 4.379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g46120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-163078355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr ++ +g Wv+eIr p   g+++r++lg++ tae Aa+a++aa ++l+g
  Bradi1g46120.1.p 30 YKGVRMRS-WGAWVSEIRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 78
                      9****998.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-312992IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-182988IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-282986IPR001471AP2/ERF domain
PROSITE profilePS5103220.6392986IPR001471AP2/ERF domain
PfamPF008477.9E-103078IPR001471AP2/ERF domain
CDDcd000182.74E-163087No hitNo description
PRINTSPR003674.1E-83041IPR001471AP2/ERF domain
PRINTSPR003674.1E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAKTAARSNG ASSAAKPQQQ QQLGGKMKTY KGVRMRSWGA WVSEIRAPGQ KTRIWLGSHS  60
TAEAAARAYD AALLCLKGSA ADLNFPVRFP FALPAAAMSP KSIQRVAAAA AAASAGAAVV  120
DFPMNADDSS SASASDGDGM VTTDCSSSSN GASAVSSPET ASSDEAAAHE LDYYGALADI  180
DAFFQSPKCM EYAMMDPCSA FFAPAPMATG DEYCSGWEQE EEGDIALWSF SSLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142688265ATERF1
3gcc_A3e-142688265ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g46120.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708701e-114AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17.
GenBankAK3761001e-114AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560937.11e-170ethylene-responsive transcription factor ERF014
SwissprotQ9SFE49e-34ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLI1GZW11e-168I1GZW1_BRADI; Uncharacterized protein
STRINGBRADI1G46120.11e-169(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.15e-26ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]