PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g46100.1.p | ||||||||
Common Name | BRADI_1g46100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 183aa MW: 19515.3 Da PI: 9.5555 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.1 | 6.6e-08 | 100 | 140 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P a +l+ a++Le+Av+Y++ L Bradi1g46100.1.p 100 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAVRYVRFL 140 699*****************966......9**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.195 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.35E-10 | 94 | 141 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.3E-11 | 96 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-12 | 96 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-11 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-5 | 101 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MDPDMMNQEQ LMNTISQLDS ALAYLASPST SPPPQPLAPP QVHPPPITTM LVPVPVQPPW 60 AATRQLFGII DSDAAGAAAP SRRRRGTGAR VSGEPQSVAA RLRRERVSQR MRALQRLVPG 120 GARLDTASML EEAVRYVRFL KSHVQALEQL AAAAIAMHGR VEADGVAAGG FYDSSSSCPY 180 YA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 100 | 105 | RLRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g46100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004687 | 9e-73 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. | |||
GenBank | AP014962 | 9e-73 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 9e-73 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229905.2 | 1e-128 | transcription factor HEC2 | ||||
TrEMBL | I1GZV9 | 1e-127 | I1GZV9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G46100.1 | 1e-128 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16110 | 11 | 11 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00120.1 | 1e-19 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g46100.1.p |