PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g45510.2.p | ||||||||
Common Name | BRADI_1g45510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 32572.3 Da PI: 6.3032 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.6e-18 | 39 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Bradi1g45510.2.p 39 RGKFSQEEEQTILQLHSILGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 84 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-24 | 19 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.286 | 19 | 33 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 19 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.814 | 34 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-17 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-17 | 39 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.01E-14 | 41 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 47 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MHMPFNEILL GIFCVAGLNR CGKSCRLRWT NYLKPDIKRG KFSQEEEQTI LQLHSILGNK 60 WSAIAKHLPG RTDNEIKNFW NTHLRKKLIK MGIDPMTHRP RTDFFSALPQ LIALANFRQF 120 LEQQPLDDQT AWLQSEAVQA AKLQYMQSLL HSAASIVASP TTTSSSLNPL TTDLEQISFL 180 SPPQMLSPRV LEGIGGTELA GQAPQNQMPS ITYDHSIGNI NVKSDEQRHG EGENISQKRM 240 LLSENSLPPL ADMPASNTCD ISTSNCNCII SPLPSWSEIL LDEELMSDCL M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-21 | 20 | 88 | 40 | 108 | B-MYB |
1gv2_A | 8e-21 | 20 | 88 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g45510.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP330481 | 0.0 | KP330481.1 Triticum aestivum MYB transcription factor SM152-2 mRNA, complete cds. | |||
GenBank | KP330482 | 0.0 | KP330482.1 Triticum aestivum MYB transcription factor SM152-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560902.1 | 0.0 | transcription factor MYB93 | ||||
TrEMBL | I1GZN9 | 0.0 | I1GZN9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G45510.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-70 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g45510.2.p |