PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g45470.1.p | ||||||||
Common Name | BRADI_1g45470, LOC100839894 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 352aa MW: 37902.2 Da PI: 8.1196 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8e-19 | 178 | 227 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f++a++Aa a+++a+ +l+g Bradi1g45470.1.p 178 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDSAQDAALAYDKAAFRLRG 227 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.35E-31 | 177 | 237 | No hit | No description |
SMART | SM00380 | 3.7E-35 | 178 | 241 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 178 | 236 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.708 | 178 | 235 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 178 | 236 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 179 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 179 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 201 | 217 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MAAIDLYNTR RNQFSSSSSS SSSDQELMKA LEPFIRSASS PTSSTSASSP FSNYPHYYSL 60 SPLPQESYYF PASSSSYTAL QAPFATPATT TTSFSQLPPL PPTSHCTSPA VYPPTNDDVV 120 GLASLGPQQI HQIQAQLFLQ HQQQQQRGSC LSLSASLLGP RAQPMKQQAH GPVQPSKLYR 180 GVRQRHWGKW VAEIRLPKNR TRLWLGTFDS AQDAALAYDK AAFRLRGDAA RLNFPDLRRG 240 GAHLAGPLHA SVDAKLTSIC HTIAAAKPKS KPSSDSPKAS ASSTTTSTEG EESSSSALSA 300 GSTPLPPPPP PQPSLPEMAS LDFTEAPWDE SDAFHLHKLP SWEIDWDSIL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 177 | 235 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-21 | 177 | 235 | 4 | 63 | ATERF1 |
3gcc_A | 5e-21 | 177 | 235 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g45470.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365040 | 1e-122 | AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564067.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | I1GZN2 | 0.0 | I1GZN2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G45470.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-40 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g45470.1.p |
Entrez Gene | 100839894 |