PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g45220.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 498aa    MW: 51558.5 Da    PI: 10.1828
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g45220.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.94.9e-401463281134
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                       aa+k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s  ss     
  Bradi1g45220.2.p 146 AAPKRTTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSMLSSIpahl 238
                       689*******************************************************************99976777777766322224666 PP

               TCP  89 ..........................................kaaksaakskksqksaasalnlakesr.akarar.are.rtrekmrikn 134
                                                                 ++++s    ++ +  +a  l+++ +s+ a a+ + +r+ r++++ ++++
  Bradi1g45220.2.p 239 raaglqtgllgsgsrfgggaraeawdrfmglgfdggpastvtSSSSSPLLLSFHSGTSA-GLDVSPSSSsAAANNDlSRKrRWEQELQQQQ 328
                       77777888888888888889999999999999999999998644444443333333332.3555553331333222344434444433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-43151331IPR005333Transcription factor, TCP
PROSITE profilePS5136927.598153207IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLLPLPSHRP PVLPATHTRA PPPPPSPPSP HHLTSPLSNP TTTAWYVRTS PTHRSNSPGQ  60
KKKGQQSIDR SCLCRAVLYV GLWPNRETMD VTGDAAGGGR RLPLQLLEKK EDQSYLQPCS  120
TSPAAAALGA GGTNGQLQQV ARKASAAPKR TTSKDRHTKV DGRGRRIRMP AICAARVFQL  180
TRELGHKTDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSM LSSIPAHLRA  240
AGLQTGLLGS GSRFGGGARA EAWDRFMGLG FDGGPASTVT SSSSSPLLLS FHSGTSAGLD  300
VSPSSSSAAA NNDLSRKRRW EQELQQQQQM QYQQQMAGYT VTQSQMPGGG TVWMVPTTSN  360
AQPGATQAGG ESIWTTFPQP GSGGGVGGAA AVYRGVPSGL HFMNLPAPMA LLPGGQAAQH  420
LGLGQAQAGG GGSAGEGHMG ILAALNAYRG QHAAAASEVT VAGQHNGAAE GGSQHHHQHQ  480
QHGGGERNES MSASDDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g45220.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642409e-94AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035139e-94AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035699e-94AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149629e-94AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126149e-94CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755137.10.0transcription factor TCP15
SwissprotQ93Z004e-45TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A2K2DPG40.0A0A2K2DPG4_BRADI; Uncharacterized protein
STRINGBRADI1G45220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-43TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]