PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g44520.1.p | ||||||||
Common Name | BRADI_1g44520, LOC100821685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 432aa MW: 48187.9 Da PI: 6.5448 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.1 | 6.3e-23 | 51 | 116 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+ + + ++v l+++a++L v +rRRiYDi+NVLe+++++ +++kn+++w+g Bradi1g44520.1.p 51 RKQKSLGLLCSNFVALYDRDDVETVGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWIG 116 79****************9999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 78.7 | 5.6e-25 | 207 | 287 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++++l+e+a+ L+ e ++++k+RR+YDi+NVL++lnliek ++k+++rw g Bradi1g44520.1.p 207 RKEKSLGLLTQNFVKLFLTMEVETISLDEAARLLLGErhaesNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 287 79****************************************************************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-25 | 47 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.26E-16 | 50 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 8.6E-29 | 51 | 116 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 7.7E-21 | 52 | 116 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.8E-23 | 204 | 288 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.4E-32 | 207 | 287 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.1E-20 | 208 | 287 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.25E-12 | 209 | 287 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MDSAAGAEAS AAATQAQPLP PYQPPPRLVL EGDGSGLGGA ARAFRHHAYS RKQKSLGLLC 60 SNFVALYDRD DVETVGLDDA ARRLGVERRR IYDIVNVLES VGILVRRAKN RYTWIGFEGV 120 PAALKELKER ALREMSGLVS PLLEEPSATN VSDDEDEDDK LGDADGDAES EKLSQSMDTT 180 SDKLSQSMDT TSDKPDTPRC QLRSDHRKEK SLGLLTQNFV KLFLTMEVET ISLDEAARLL 240 LGERHAESNM RTKVRRLYDI ANVLSSLNLI EKTQQVDSRK PAFRWLGQAK RKEGDDVTVA 300 LPPTRTILSN KRAFGTDITN IDTKRSKWDS GTENKSKLMQ GDGSMSRTFE NQLGQGKSSG 360 FVYGPFHPAG ARKQELDRAL REKERKNIQD WENLTKSLQY QNPTINGLFG HYAEAWRSWY 420 LDFTRDDPST S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 2e-37 | 50 | 279 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 379 | 384 | LREKER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g44520.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375358 | 1e-165 | AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564010.1 | 0.0 | E2F transcription factor-like E2FE | ||||
TrEMBL | I1GZC3 | 0.0 | I1GZC3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G44520.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 | Representative plant | OGRP2474 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-102 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g44520.1.p |
Entrez Gene | 100821685 |