PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g44270.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-X1
Protein Properties Length: 926aa    MW: 99055.9 Da    PI: 8.0269
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g44270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.73.9e-06371388118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H Cq  CH+GpC+ C
  Bradi1g44270.2.p 371 CGNHDCQDVCHPGPCGDC 388
                       ****************99 PP
2zf-NF-X122.72.2e-07429446118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG H+C+ +CHeG+CppC
  Bradi1g44270.2.p 429 CGVHRCKVTCHEGECPPC 446
                       ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.06E-6128198No hitNo description
PROSITE profilePS500168.831135194IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590138191IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.332138192IPR001841Zinc finger, RING-type
SMARTSM004380.023252270IPR000967Zinc finger, NF-X1-type
PfamPF014226.8254269IPR000967Zinc finger, NF-X1-type
CDDcd060086.49E-10297345No hitNo description
PfamPF014220.046307324IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0027307326IPR000967Zinc finger, NF-X1-type
CDDcd060082.16E-8361414No hitNo description
PfamPF014228.5E-5371388IPR000967Zinc finger, NF-X1-type
SMARTSM004385.7E-4371390IPR000967Zinc finger, NF-X1-type
CDDcd060088.34E-13419467No hitNo description
PfamPF014223.3E-5429446IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6E-4429448IPR000967Zinc finger, NF-X1-type
CDDcd060085.47E-7514566No hitNo description
PfamPF014220.043524542IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043524543IPR000967Zinc finger, NF-X1-type
PfamPF01422110581597IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49581599IPR000967Zinc finger, NF-X1-type
PfamPF014220.32624639IPR000967Zinc finger, NF-X1-type
SMARTSM004380.21624659IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MQPSTDQRRG NGGAATASSR GVWRPRSAAP MTPAAAAAAP GQIPAYAAPH PNNTAPPILP  60
LPTPASDNRS RHRRGPRRPN QNNGNYRRGP PQERAPSAPA NAPAPADAPA PAAPAGNGSV  120
PQLVQEIQDK LARGAVECMI CYDMVRRSAP VWSCGSCFSI FHLPCIRKWA RSPASVSDAS  180
DPASSWRCPG CQSVHDVPAR DIAYTCFCGR RRDPPNDLFL TPHSCGEPCS KPLDRTDPAA  240
KGASMEDVAS RCPHVCVLQC HPGPCPPCKA FAPARPCPCG KQSITRRCAD RSTPVTCGQQ  300
CEQLLPCRRH RCEKICHTGP CGDCEVNFSA QCFCGKKTET LLCGEMVLKG KLSEKDGVFS  360
CSDVCGHHLP CGNHDCQDVC HPGPCGDCEL VPAKVTTCHC GKTKLQEKRV SCLDPIPTCD  420
KVCDKMLPCG VHRCKVTCHE GECPPCFVRV EQRCRCGASG QMVECYKVLK EEFRCNKPCG  480
RKKNCGRHRC SECCCPLSKP FAQHEGDNLD PHFCQIPCGK KLRCGQHGCQ HLCHSGHCDP  540
CRETIFNDLT CACGRTSIPP PQPCGTPTPS CPHQCLVPQP CGHPASHQCH FGDCPPCVVP  600
VMRECIGGHV DIRCNQPCGK NRQCGLHACG KTCHPFPCDQ PPTNGEASSS SGVKASCLQI  660
CGAPRRELES TGKRVPLGQR KLSCDEECAK MERKRVLAEA FDITPPNLDA LHFGENTNRW  720
KLSVQAVGWE PKRFVTVHVT PKSKVPARVL GSKPGVPVSA SHPYFDPLVD MDPRLVVAML  780
DLPRDADVSS LVLRFGGECE LGAAMFCPSS STQASSSGNI WVAGQRDGGL AAKGSANPWK  840
KASTSEPDPS GDWTVLGQAP GTSVLDQAPG LGTSNKHKPP PRSEAGSSAS APRTGAGSSA  900
ETSARQSVSK LQPDIEVDDW EESCE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g44270.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563997.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2K2DPA60.0A0A2K2DPA6_BRADI; Uncharacterized protein
STRINGBRADI1G44270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1