PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g44241.1.p
Common NameBRADI_1g44241
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 867aa    MW: 99546.8 Da    PI: 8.1625
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g44241.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.92.2e-15156270291
              FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk........................tekerrtraetrtgCkaklkv 68 
                       fYn+YA+ vGFs +k+ +++     + ++t+ t++C++ gk   ++                           +k r++++ + t+C+a+++v
  Bradi1g44241.1.p 156 FYNTYASIVGFSAKKAGNYHCrgAVDSKTTRCTYRCNRAGKIVGKEILeerrkrrehnrkknnksgvscdaqIKKPRNKNTIEITDCHATMVV 248
                       9***************999986678999************97654433456778999************998888899999************ PP

              FAR1  69 kkekdgkwevtkleleHnHelap 91 
                       +++ ++kw+vt++el+HnH+l+p
  Bradi1g44241.1.p 249 TLK-EDKWVVTNIELQHNHALSP 270
                       ***.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-14156270IPR004330FAR1 DNA binding domain
PfamPF105514.0E-30390484IPR018289MULE transposase domain
PROSITE profilePS509669.273615651IPR007527Zinc finger, SWIM-type
PfamPF044340.0013619651IPR007527Zinc finger, SWIM-type
SMARTSM005750.0013626653IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MFMITGRDGR DDYSEEPDDG DDDELEQRVY DDAAFDSEDY NDNTQPVSIA CENLSVMANK  60
AQHVGTPCAD RSIDSENLSV ITNGVQQQAT GQTHRYEKQQ AVGDPPVVEH LSREDIENYL  120
KNETVLASQS CSQEVRGQHV PHINMSFCSD AEAFAFYNTY ASIVGFSAKK AGNYHCRGAV  180
DSKTTRCTYR CNRAGKIVGK EILEERRKRR EHNRKKNNKS GVSCDAQIKK PRNKNTIEIT  240
DCHATMVVTL KEDKWVVTNI ELQHNHALSP PGEAKFLRSH KHMTEEEKLL IRTMNSVKLP  300
SRKIMAILAG FRGGMSALPY TKKDVSNYRT AIRNESNQND MMMVIEFFRK RQMEDPRFYY  360
AFRVDDEHKV QNIFWANGNC RKFYDLYGDC ISFGTTYKTN KYNLLFAPFV GITGHANNCL  420
FACAILQNEI VETFTWLFEE FLQCMGGKMP LTIITDQDVA MKQAIPNVFT QTKHRNCLFH  480
IKKKAEEKCA RCFATRRTLH IEFDDIINKS QIEEESEGTN AIFKDNVGST YSIISFLGEY  540
QRISESIVEK EREQDSKTRT TKPILWAGSE LELQAAKLYN RNIFYKFQKQ LKMTQQVHVE  600
EIEKNVKLDF RERKFMVMVD WANEDISCIC ARFQKDVMLC CHALKVLLHL NILVLPEKYY  660
IQRWRRAENV EARDKQYNVP FELTTENSHF RYSILSKKMT DLAANACQLT ETYTNLLNKG  720
TKLCGKINEI RKEAHDKHKQ THTTHHDVDE QPPGETFPEN STAGHGPEDM YKEPDIAKSK  780
GRPKVAGRQK TIVEEIFTKQ RITCSHCGEK SKTNSDKPAT HKGADKDVSS PLPPRDVQSP  840
RIRKPTQKAL ESMLLTQTRK QNKQVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g44241.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757844.20.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024318808.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024318809.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3L6790.0A0A0Q3L679_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-71FAR1-related sequence 5