PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g43990.1.p | ||||||||
Common Name | BRADI_1g43990, LOC100840783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 437aa MW: 47709.9 Da PI: 5.7859 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.2 | 3.3e-08 | 18 | 61 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC+ C + H+ H++v Bradi1g43990.1.p 18 ARACDGCLRRRARWYCAADDAFLCQACDASVHSAnplarrHERV 61 578*****************************657888888876 PP | |||||||
2 | CCT | 66.8 | 5.9e-23 | 382 | 425 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Bradi1g43990.1.p 382 RDARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 425 99****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.0E-12 | 16 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.722 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-6 | 19 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.49E-10 | 19 | 63 | No hit | No description |
Pfam | PF06203 | 1.1E-17 | 382 | 424 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.934 | 382 | 424 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MSSSLAKAAA GAMGSKAARA CDGCLRRRAR WYCAADDAFL CQACDASVHS ANPLARRHER 60 VRLRPTSPLQ AGAGGPRARR GDEVVPAWFK RKPRTPRGKS VIGHLLSSRR PVVVPDEASG 120 GEGSPEEHKL FEGETDEEEL LYSVPVFDPA LAELCSPSSP RHLEDYASCC NEDRVVVLES 180 PTEPAAPSLA VDQFFPDSVV SFGPTDAELM EFAADMEALL GRGLDEGTEE EPFCMEALGL 240 IQPMVDVDGA GGRVKMETDG EARGMFLACG LEREPETEVS GNMLGIDFDD DYGSPQATPD 300 ENAASGSAAR FLPRSLSLNL NYEAIIDKWE KSPWADGKRP DVKLDGCWPH DYSMSVWMMG 360 GVLVGHGTEE LRTPRTKMDG GRDARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR 420 FVKRANGVAV ATACVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 392 | 408 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g43990.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370304 | 1e-104 | AK370304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108I12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560836.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | I1GZ67 | 0.0 | I1GZ67_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43990.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3283 | 30 | 58 | Representative plant | OGRP802 | 16 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-71 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g43990.1.p |
Entrez Gene | 100840783 |