PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g43480.1.p | ||||||||
Common Name | BRADI_1g43480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YB | ||||||||
Protein Properties | Length: 219aa MW: 23397.6 Da PI: 6.0146 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 138.5 | 1.8e-43 | 22 | 118 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdr++Pianv+rim+++lP +akis++ake++qe sefisf+t+ea+++c + +rk ++++d+lwa+ +lGf+dyv+p+++yl++ r++ Bradi1g43480.1.p 22 VREQDRLMPIANVTRIMRRMLPPHAKISDNAKELIQESTSEFISFLTGEANERCLKSRRKILTAEDILWAMDNLGFDDYVQPFTAYLQRMRDI 114 69******************************************************************************************* PP NF-YB 94 egek 97 e+++ Bradi1g43480.1.p 115 ENNN 118 9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-41 | 21 | 117 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.35E-33 | 25 | 118 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.0E-23 | 29 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.6E-11 | 56 | 74 | No hit | No description |
PRINTS | PR00615 | 3.6E-11 | 75 | 93 | No hit | No description |
PRINTS | PR00615 | 3.6E-11 | 94 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MENSGGAPNT GAPEEVPPVV EVREQDRLMP IANVTRIMRR MLPPHAKISD NAKELIQEST 60 SEFISFLTGE ANERCLKSRR KILTAEDILW AMDNLGFDDY VQPFTAYLQR MRDIENNNGV 120 GVVNNRLAAA TGPRAPAPAP PLVPVPVAAA AQGLMQMQRG AMYAPRPPAP VQQQGYAIGA 180 MPLQVRAPPP PLGGQRPVGD GEGSSRGEKP ADGEGSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-46 | 22 | 113 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g43480.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229872.1 | 1e-110 | nuclear transcription factor Y subunit B-8 | ||||
Swissprot | Q84W66 | 7e-49 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | I1GZ06 | 1e-155 | I1GZ06_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43480.1 | 1e-156 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29183 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-47 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g43480.1.p |