PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g43470.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YB | ||||||||
Protein Properties | Length: 164aa MW: 17376.2 Da PI: 4.6383 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 75.7 | 7.1e-24 | 22 | 113 | 7 | 96 |
NF-YB 7 flPianvsrimkkvlPan..akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +P + ++ im ++l ++ a+is a + v+ cv efi+ vts a+d c+++++ t+++ddl+ a+ +lGf +yv pl+ yl++yre++g Bradi1g43470.3.p 22 KFPASYLTGIMARALSQHpgARISGGASDAVDRCVEEFIAVVTSAAADWCREQNKTTLDSDDLINAMEDLGFYQYVGPLEDYLRQYREFQGR 113 578889999******987669*******************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.8E-23 | 19 | 114 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.73E-21 | 23 | 114 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-8 | 39 | 88 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MEGRGQANGP GNNAREGNRR TKFPASYLTG IMARALSQHP GARISGGASD AVDRCVEEFI 60 AVVTSAAADW CREQNKTTLD SDDLINAMED LGFYQYVGPL EDYLRQYREF QGRQPAPPTP 120 AALVTTVEMP PPQVPSGAAA ASTSRMPPAS AAAPAHARDD VDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 5e-15 | 23 | 109 | 9 | 93 | NF-YB |
4awl_B | 6e-15 | 23 | 109 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 6e-15 | 23 | 109 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g43470.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229873.2 | 1e-117 | nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | I1GZ05 | 1e-116 | I1GZ05_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43470.1 | 1e-117 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37154 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.3 | 1e-21 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g43470.3.p |