PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43460.1.p
Common NameBRADI_1g43460, LOC100828852
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 228aa    MW: 24064.3 Da    PI: 4.8898
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB139.77.6e-4427123197
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdr++Pianv+rim++vlP +akis++ake++qe  sefisf+t+ea+++c +++rk ++++d+lwa+ +lGf+dyv+p+++yl++ r++
  Bradi1g43460.1.p  27 VREQDRLMPIANVTRIMRRVLPPHAKISDNAKELIQESTSEFISFLTGEANERCLKNRRKILTAEDILWAMDNLGFDDYVQPFTAYLQRMRDI 119
                       69******************************************************************************************* PP

             NF-YB  94 egek 97 
                       e+++
  Bradi1g43460.1.p 120 ENNN 123
                       9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-4126122IPR009072Histone-fold
SuperFamilySSF471134.68E-3330123IPR009072Histone-fold
PfamPF008081.3E-223497IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.8E-116179No hitNo description
PRINTSPR006155.8E-118098No hitNo description
PRINTSPR006155.8E-1199117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDNNGGAPNT GAAEAASAEE VLPVVEVREQ DRLMPIANVT RIMRRVLPPH AKISDNAKEL  60
IQESTSEFIS FLTGEANERC LKNRRKILTA EDILWAMDNL GFDDYVQPFT AYLQRMRDIE  120
NNNGVCVVNN PLAAAAGPRA PAPVLPLVPV SVAAAAQGLM QMQRGAMYAP RPPAPVQQQG  180
YAIGAMPLQV RAPAPVVGGQ QGSVLGGKRP VGDGEGSSRG DVGDEAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-4627118697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229872.11e-164nuclear transcription factor Y subunit B-8
TrEMBLA0A0Q3K2Q11e-162A0A0Q3K2Q1_BRADI; Uncharacterized protein
STRINGBRADI1G43460.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2918324
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.25e-49nuclear factor Y, subunit B6