PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43220.1.p
Common NameBRADI_1g43220, LOC100823662
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 402aa    MW: 43869.6 Da    PI: 4.8354
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-06445540
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+ ++e++   +C+++   lC +C  + H+       Ht++
  Bradi1g43220.1.p  4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                      6******99*********************657888889876 PP
2zf-B_box25.92e-084789541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       C+++ ++++   C + ++ lC++C  ++H+       H++++
  Bradi1g43220.1.p 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgspdagHKRQN 89
                      7*****************************6688999998876 PP
3CCT62.61.2e-21345388144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R+ a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+ 
  Bradi1g43220.1.p 345 RDSAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 388
                       899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.869147IPR000315B-box-type zinc finger
CDDcd000213.76E-8447No hitNo description
PROSITE profilePS501198.934390IPR000315B-box-type zinc finger
CDDcd000212.50E-54788No hitNo description
PfamPF006438.6E-64790IPR000315B-box-type zinc finger
SMARTSM003360.14890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.971345387IPR010402CCT domain
PfamPF062039.2E-17345387IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LEENTSLCQN CDWNGHSAGS PDAGHKRQNI NCYSGCPSSA ELSRVWSFIL DIPNVAPEPN  120
CEQVISMMSI SDSAVSNEDN APGGNSFLDI ASATLSSDHN NDDKLKTVIG SSSEAGVNLL  180
PHATGQTAVS VDSTTAKVPY TPDKHMFSKD TIYEDFSMDD IDLSYENYEE LFGNSHIQTE  240
ELFDDAGIDS YFEMKEVLAG SSDEQPKPMQ PAASNAVSAD SGMSNPGVKD DSSLCIPVRQ  300
ALSFSGFTAE SNAGDYQDCG VSSLLLMGEP PWLPPGPDGS FAGIRDSAIT RYKEKKKRRK  360
FDHKIRYESR KARADVRKRV KGRFVKAGEA YDYDPLDTRS Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354358KKKRR
2354359KKKRRK
3355359KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2531300.0AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563937.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-122COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLI1GYX70.0I1GYX7_BRADI; Uncharacterized protein
STRINGBRADI1G43220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-100CONSTANS-like 9