PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43021.1.p
Common NameBRADI_1g43021
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 736aa    MW: 86350.8 Da    PI: 8.1691
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.92.9e-22180292191
              FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.....................tekerrtraetrtgCkaklkvkk 70 
                       +fYn+YA+ +GFs +k+++++s   + ++ t++tf+C+++gk  +++k+                      +k+r+++  + t+Cka+++v++
  Bradi1g43021.1.p 180 EFYNTYASVCGFSAKKASNYHSrrMNVDKPTRYTFKCNRSGKVVDKQKQaekrrakqikraeekvvqglqLQKKRKRNLLEVTDCKAQMVVSL 272
                       6********************9543456799***********999999999******************99999999**************** PP

              FAR1  71 ekdgkwevtkleleHnHelap 91 
                       +  gkwe+++lel+HnHel+p
  Bradi1g43021.1.p 273 R-AGKWEIITLELDHNHELSP 292
                       *.9****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-22180292IPR004330FAR1 DNA binding domain
PfamPF105516.6E-10410473IPR018289MULE transposase domain
PROSITE profilePS509669.928650686IPR007527Zinc finger, SWIM-type
PfamPF044344.5E-5660686IPR007527Zinc finger, SWIM-type
SMARTSM005755.2E-5661688IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
NKMFMITGRT EDTYLRTEEA GNVSWQSASS EEEAGSLDKQ WTEQTGNMEH LPDRQGIINH  60
EHQKGKSNQQ QFLHVDEEPK WAENANNTEF RLDGSDTHGS SDQERQEDSA HQAHNGESPR  120
DENTSGQGGG EKEQLEEILS EEDIHIFLEN EQTISSSQEV RESLVPRMRM LFDTDKEAFE  180
FYNTYASVCG FSAKKASNYH SRRMNVDKPT RYTFKCNRSG KVVDKQKQAE KRRAKQIKRA  240
EEKVVQGLQL QKKRKRNLLE VTDCKAQMVV SLRAGKWEII TLELDHNHEL SPPDEARFLR  300
SHKQMTEEEK LIIRTFNAVK LPTRKIMSIL ASYRGGIKAV PYNKKYVSNY RTAIRKVNSK  360
NDMMQVSDYF RKRQAQDPTF YCAIKLDKNS TVESLFWADG KARQLYEAYE NETIETFKWL  420
FETFIHCMND KQPVSIITDQ DGIFPTDVAM KQAICQVFTS ATHRNFLWHI KKKAEDRCAK  480
AFASKKYLHE EFNDILNNSL TEEEFEDLWT RMIDKYVVQD LKYLQDMWLD RRRFVPVYYK  540
NVFFPFINST ARSEGTNAIF KDNVCSTYSV ISFLGEYQTI AENIEEKEKE LDHKWEIEAG  600
KAYNRAIFYK FQKQLRFTEN MHIEEVVRFE KYEVYKSNYH AKMEFRSRRY IVAVDIKNEG  660
FACLCCKFQK DGILCAHILK VLVHLNIPRI LDKCIIQRWR PRDRKCLCTR QPPPSYAPGS  720
MREIQHTLAL VHIHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236728.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3NM140.0A0A0Q3NM14_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-61FAR1-related sequence 5