PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g42040.3.p | ||||||||
Common Name | BRADI_1g42040, LOC100829075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-other | ||||||||
Protein Properties | Length: 361aa MW: 40042.8 Da PI: 7.4226 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +ft+ ++ e+ee+ + n p ++ ++ LA+k +++ +qV +WFqNrR+ ++ Bradi1g42040.3.p 13 RFTHAEVAEMEEHLRHlnNAIPHRDVIQGLADKFtasparagkiSVQPKQVWNWFQNRRYSQR 75 69999*******999554999*********************99****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-11 | 12 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-7 | 13 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.6E-6 | 13 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.06E-4 | 13 | 77 | No hit | No description |
PROSITE profile | PS50071 | 10.139 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 9.8E-41 | 123 | 250 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRPPSSGGP AFRFTHAEVA EMEEHLRHLN NAIPHRDVIQ GLADKFTASP ARAGKISVQP 60 KQVWNWFQNR RYSQRNRTTR GAPLPQGKML PTGAADEHHS ASFGAQSASS VYPTGKNSSN 120 GGQVDFEAKS ARDGAWYDVA HFLSHRLFET GEPEVRVRFS GFGAEEDEWI NVRKCVRQRS 180 LPCEPTECVA VLPGDLILCF QEGKEQALYF DARILDAQRR RHDVRGCRCR FLVRYDHDHS 240 EEIVPLRKVC RRPDNGFRQH ILHANRVAAS AQDVHMGIQI DRSSAEQKPQ KPHKMMDVNT 300 DEVTMVPKVE PTDKPVVSLP AASISTRGDS SSDVTMKDAG ATPEVEAADE GQGDKMNAGE 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 1e-47 | 126 | 254 | 6 | 134 | SHH1 SAWADEE |
4iur_B | 1e-47 | 126 | 254 | 6 | 134 | SHH1 SAWADEE |
4iut_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 1e-47 | 126 | 254 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g42040.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563870.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_010227690.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Swissprot | Q8RWJ7 | 1e-112 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | I1GYK9 | 0.0 | I1GYK9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G42040.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-101 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g42040.3.p |
Entrez Gene | 100829075 |