PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g41993.1.p | ||||||||
Common Name | BRADI_1g41993, LOC100827355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10388.3 Da PI: 5.6485 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1.1e-08 | 6 | 51 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+e+ + +a + + g +W ++ar +g gR++++ + ++ Bradi1g41993.1.p 6 DWTEELNNVFEQALAIYEDGtpdRWQKVARAVGGGRSAEDMIRHYE 51 6*****************99********************999985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0017 | 3 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.69E-10 | 5 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-6 | 6 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 93 aa Download sequence Send to blast |
MMSESDWTEE LNNVFEQALA IYEDGTPDRW QKVARAVGGG RSAEDMIRHY EYLQRDVHHI 60 ETTPQPGESS SSRSKASGSG SSSKEKRYPK PQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 7 | 88 | 11 | 87 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g41993.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563864.1 | 3e-63 | protein RADIALIS-like 4 | ||||
Swissprot | Q6NNN0 | 1e-16 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A0Q3H727 | 7e-62 | A0A0Q3H727_BRADI; Uncharacterized protein | ||||
STRING | AC204212.4_FGP001 | 3e-21 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18328.1 | 1e-16 | RAD-like 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g41993.1.p |
Entrez Gene | 100827355 |