PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g41712.2.p | ||||||||
Common Name | BRADI_1g41712, LOC100821586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 37188.8 Da PI: 8.0291 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.9 | 5.7e-55 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL++kv++ +++ +++i+e+d++k+ePw+Lp k+k +ekewyf+s rd+ky+tg r+nrat +gyWkatgkd+e+ Bradi1g41712.2.p 14 LPPGFRFHPTDEELISYYLARKVADVNFSGARAIAEIDLNKCEPWELPDKAKMGEKEWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREIR 106 79****************************999***************99999**************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +g+lvg+kktLvfy+grapkg kt+Wvmhe+rl Bradi1g41712.2.p 107 SArTGALVGMKKTLVFYRGRAPKGAKTQWVMHEFRL 142 9868889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 10 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.738 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-27 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048467 | Biological Process | gynoecium development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MERYGLLGTR EEELPPGFRF HPTDEELISY YLARKVADVN FSGARAIAEI DLNKCEPWEL 60 PDKAKMGEKE WYFYSLRDRK YPTGLRTNRA TGAGYWKATG KDREIRSART GALVGMKKTL 120 VFYRGRAPKG AKTQWVMHEF RLDGNCAYHF FSNNNATRDE WVIAKIFVKP GALPAARNKL 180 ARFGLQGSTG GADTSCFSDS TTSVSIGCGG GGGDTTTNTS SLFAAAADGE SSSCGGGNNN 240 NCGRELVPCF STGAHMDATL LGIGQYDPAP LAMEQPPALY QLSAARSVQD NLLFLSGGGL 300 QSGLVSPLGV GGGAFQYWPT SSGYDMKPPQ MAVGPGQLDG SFGWGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-53 | 14 | 169 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 14 | 169 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:12787253, ECO:0000269|PubMed:14617069, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g41712.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004679 | 1e-132 | AP004679.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09. | |||
GenBank | AP014962 | 1e-132 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-132 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563845.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Refseq | XP_024313144.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q9FRV4 | 5e-82 | NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A0Q3H6Y0 | 0.0 | A0A0Q3H6Y0_BRADI; Uncharacterized protein | ||||
STRING | MLOC_65286.1 | 1e-154 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9940 | 35 | 43 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 6e-84 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g41712.2.p |
Entrez Gene | 100821586 |