PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g41693.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 532aa MW: 61607.8 Da PI: 9.4426

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g41693.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.8	2e-09	68	107	51	90
FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++ ++ r+gCk ++++ ++kd+ w++t++ l+HnH+l+ Bradi1g41693.1.p 68 NKKNASSIRCGCKTMIRLLRTKDHGWYITDFILHHNHPLS 107 57889999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-6	69	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-19	202	290	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.322	460	496	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MPVPGRAGPL ESAHRGFAQR TSENILSVQS GLCFDCLPEA YEYFNLYSWE VGFGIRYKKA 60 NVTNGFPNKK NASSIRCGCK TMIRLLRTKD HGWYITDFIL HHNHPLSRNN GEKLCWSSHK 120 HIDRYTRELV RNLREKDVPL TKVYSILGNY FGSVEDIPNK RSLENLCKQI SKEEANDDKR 180 GSLVLFMNGK SKLDYQYFGD AITFDTTYKT KLYGMPFGLS VGVNNHFQSI IFSGVLMRQE 240 TIESFEWIFR EFTSLVGGKP HVTILTAMEV AIKRVLKSTT HRWCKWHVFK MAKERLGSVY 300 TKNNNFKAEF HKLINCNITV PEFEAAWKEL MEKYDLKEHH FLTSIYESRH RWEKPFFSGI 360 FCAKMTSTQR SESANHMLKG YVPPGASMHL FVKQYNTLIA DLISKEDSEN QRTRMVGVVL 420 KTRWPIEKHA ASIYTSKMLE MFSDHSFDSA AREKWSKVQY EVTISDDRGL YTCECGLAEH 480 MGMLCCHSIQ VMLRLGVDKV PDAHILKRWT KNASDVLPHH LAHLQNTQRF TK

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MPVPGRAGPL ESAHRGFAQR TSENILSVQS GLCFDCLPEA YEYFNLYSWE VGFGIRYKKA  60
NVTNGFPNKK NASSIRCGCK TMIRLLRTKD HGWYITDFIL HHNHPLSRNN GEKLCWSSHK  120
HIDRYTRELV RNLREKDVPL TKVYSILGNY FGSVEDIPNK RSLENLCKQI SKEEANDDKR  180
GSLVLFMNGK SKLDYQYFGD AITFDTTYKT KLYGMPFGLS VGVNNHFQSI IFSGVLMRQE  240
TIESFEWIFR EFTSLVGGKP HVTILTAMEV AIKRVLKSTT HRWCKWHVFK MAKERLGSVY  300
TKNNNFKAEF HKLINCNITV PEFEAAWKEL MEKYDLKEHH FLTSIYESRH RWEKPFFSGI  360
FCAKMTSTQR SESANHMLKG YVPPGASMHL FVKQYNTLIA DLISKEDSEN QRTRMVGVVL  420
KTRWPIEKHA ASIYTSKMLE MFSDHSFDSA AREKWSKVQY EVTISDDRGL YTCECGLAEH  480
MGMLCCHSIQ VMLRLGVDKV PDAHILKRWT KNASDVLPHH LAHLQNTQRF TK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g41693.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197126.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K2DNS0	0.0	A0A2K2DNS0_BRADI; Uncharacterized protein (Fragment)
STRING	EMT28540	0.0	(Aegilops tauschii)
STRING	Pavir.Ba03654.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-67	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g41693.1.p