PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g41684.2.p | ||||||||
Common Name | BRADI_1g41684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 29011.8 Da PI: 9.4464 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.6e-07 | 9 | 71 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 ++WT+eE+ +l+ a + ++ W+ Ia++ + +R +kq+k +++ + Bradi1g41684.2.p 9 MAWTPEEERRLASAWLENSNDpidgnnkkikkYWDDIAACYNsttpsnRKRDAKQLKQHFHRV 71 68**********************************************99**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-4 | 10 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
GTSRTAQHMA WTPEEERRLA SAWLENSNDP IDGNNKKIKK YWDDIAACYN STTPSNRKRD 60 AKQLKQHFHR VKTKINAFHG EWCSLNKVYK SGYSDDQLTD MAMEKYEDHG KWLAVVRKLN 120 GEEEKSPSVG INVTSHVIDL EKEERPIGRH KAKAERAGKS KAREAPEGVI VLGEKLDKFI 180 EVQATSRQER QKVIESQQRM SSDKVDAARL AKETKMLVVY EKLILADTSL LDEESKAARV 240 RALASMESIL FPKGD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g41684.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237543.1 | 7e-74 | uncharacterized protein LOC100844493 | ||||
TrEMBL | A0A2K2DNQ7 | 0.0 | A0A2K2DNQ7_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | BRADI2G47930.1 | 1e-120 | (Brachypodium distachyon) |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g41684.2.p |