PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g40407.2.p | ||||||||
Common Name | BRADI_1g40407, LOC100843440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CPP | ||||||||
Protein Properties | Length: 487aa MW: 53433.2 Da PI: 7.488 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.8 | 4.9e-14 | 68 | 106 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C N+ e Bradi1g40407.2.p 68 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNRVE 106 689*************************.********987 PP | |||||||
2 | TCR | 50.4 | 4.5e-16 | 150 | 189 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC dCkN e Bradi1g40407.2.p 150 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 189 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.7E-13 | 67 | 107 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.376 | 68 | 190 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.7E-11 | 69 | 104 | IPR005172 | CRC domain |
SMART | SM01114 | 6.0E-19 | 150 | 191 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-12 | 153 | 188 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MEPEEQQMVQ PPVSASAPAA ELKVPSHQPP PKPAASTQPA MPVPRPWPVA FTPMKPMVEV 60 KSGTPQKRKK QCNCKNSHCL KLYCECFAAG LYCDGCNCKQ CGNRVENEKA RQEAINNTKQ 120 RNPKAFQPKI ENVSNTLSVR KDAGVPSFPK HNKGCHCKKS GCLKKYCECF QANILCSKNC 180 KCMDCKNFEG SEELQAIIQG YNASDRNNIQ QATNVTLNGP IGSSGHKCSP ACRRHPDDPL 240 GSEANHVDAS QVASSTGLEG CIGNYHSKSK MFYRSPLAHT IHPTDVNDLA NHLVIVCRKA 300 TEAFLTIADH KVEIDVERTS CTKTDLNNDK MKNQEVQKAV VRQPDEATYI DHRNVGDLES 360 PCSNSQEDSR PASPGTQALM CDEQGTAFGT DYRSSFPMAL HDQDTSELNG VQEKTVLTGF 420 RDYLRLVITR GKINEGNILS ESAMELEDQR HQSVSTNLLP LKAVEKPKSP DDSENPKASE 480 PSSSNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-26 | 69 | 199 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-26 | 69 | 199 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g40407.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753297.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | I1GYE3 | 0.0 | I1GYE3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G40407.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 8e-89 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g40407.2.p |
Entrez Gene | 100843440 |