PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g39180.2.p | ||||||||
Common Name | BRADI_1g39180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 528aa MW: 57668.9 Da PI: 8.86 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97 | 1.4e-30 | 105 | 158 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Bradi1g39180.2.p 105 PRLRWTPDLHMAFLRAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 158 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 101 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.496 | 101 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-14 | 103 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-22 | 105 | 160 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.8E-9 | 106 | 157 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MGEVKEKQEV VEILEDDGKG TGTWDNAVPL ATLDLNEDFS EAGNMYYNDA DDDDNGGGGS 60 TSEVAGGRNS SNNSSTNNDS DSRKGDMDGC EKVPTVRQYN RSKHPRLRWT PDLHMAFLRA 120 VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK IEHQSSHERA AISSVFPPMN 180 FHMRRADHRF HDMFFQRAAG SSLSSRLNEN SGILASRNAD LPDTRQIYGL LQRRKPPSAI 240 HTFDSNNYSS LRNQEWAFTQ RVAAARTAAV NDHVPAKGLV HEMTFRKDRK PTPDKFNARD 300 ANAANRTSPL ASMSGAADRR PEDGAKVGSI NGIGSSPRPT SRTMSAARLT TTGFELSPSL 360 WPRAAGSNGC DHPSRNISTT SSSDLVGATR ESGSLPLLQK QEQREPTAPS KNIEVKETRF 420 ETDAWRKKTL ASEASGWTPE LQLSLSPNVE ADNNGRGKKR SSAELEVGNH NNNLPLSLSL 480 SLRDCVAVDD GGCGDARRLE VATDSRSKKA ALGLSTLDLT MSIKALE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-18 | 106 | 160 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-18 | 106 | 160 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-18 | 106 | 160 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-18 | 106 | 160 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g39180.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073606 | 1e-101 | AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316695.1 | 0.0 | uncharacterized protein LOC100830272 | ||||
TrEMBL | A0A0Q3H6I6 | 0.0 | A0A0Q3H6I6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G39180.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-33 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g39180.2.p |