PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g38730.2.p | ||||||||
Common Name | BRADI_1g38730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 370aa MW: 41371.7 Da PI: 6.9228 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 8e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk Bradi1g38730.2.p 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDK 101 69****************************.9***************943444442456********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + + +g++ktLvfy grap+g+ktdW+mheyrl Bradi1g38730.2.p 102 AIFLGsSARRIGMRKTLVFYVGRAPHGRKTDWIMHEYRL 140 ***9756677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-58 | 5 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.054 | 10 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MHPSSGAVSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSSAR RIGMRKTLVF 120 YVGRAPHGRK TDWIMHEYRL DEDNVDIQSG TLQEDGWVVC RVFTKKSYPR GINPAEMAAF 180 EDDELLHPFP GQAQASAAGA MQTSKHIHMN NPHLMHQQQQ HYDYPSFDAS MQLPQLMSTE 240 HELPSFLPGP PAVAMTSLDV ECSQNLMKLT SNGSSNGMLH HGCISTSGGD PRLAATDWSV 300 LDKLLASHQN LDQLFQGMVT ATAAAASMAP YQQQQQLMEL GSSNGNSSMQ RLPLQYLGCE 360 AADLLRFSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-52 | 8 | 167 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-52 | 8 | 167 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-52 | 8 | 167 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-52 | 8 | 167 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 8 | 167 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-52 | 8 | 167 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-52 | 8 | 167 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g38730.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313114.1 | 0.0 | NAC domain-containing protein 76 isoform X1 | ||||
Swissprot | Q5Z6B6 | 1e-120 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0Q3H6F4 | 0.0 | A0A0Q3H6F4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G38730.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-90 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g38730.2.p |
Publications ? help Back to Top | |||
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