PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g38666.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 663aa    MW: 76493.6 Da    PI: 8.9538
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g38666.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.85.5e-1156141188
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +++n Y+ e GF +r  +s++        k+    t++t vC +eg+++++++         ++ r+gC   ++v +++d  w++++ +leHn
  Bradi1g38666.1.p  56 EYFNLYSWEFGFGIRYGRSHNYkcksgpkKDVIYRTMQTIVCGCEGYPKKKNT---------SSVRCGCATFIRVLRSDDYGWYIKDRKLEHN 139
                       589************87766554566653333344678899999999988655.........59***************************** PP

              FAR1  87 He 88 
                       H+
  Bradi1g38666.1.p 140 HP 141
                       *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-856141IPR004330FAR1 DNA binding domain
PfamPF105514.2E-28226318IPR018289MULE transposase domain
PROSITE profilePS509669.409477513IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
LSWFYCKFTV KARQVFMNGG TSPLENSLRG FAHRTTDNIL CPKIVLCFDS LPEAYEYFNL  60
YSWEFGFGIR YGRSHNYKCK SGPKKDVIYR TMQTIVCGCE GYPKKKNTSS VRCGCATFIR  120
VLRSDDYGWY IKDRKLEHNH PPSRNSGEKL CWPSHKHIDR YTRDLVRNLR ENNVPLTKVY  180
SILGTHFDED PSFVYTADLD SDGRIRTLIW VNGKSKLDYR YFEDAITFDT TYKTNLYGMP  240
FGLFVGVNNH FQSIIFSGVL MRRETIESFE WIFREFTSLM GGKAPATILT DQCRAMEVAI  300
ERVFTSTTHR WCKWHVLKMA KEKLGSVYTK YSNFKSEFHR LINYSITVAK PYFSGVFCAK  360
MTSTQRSESA NHMLKGYVPP GAPMHLFVKQ YNKLIADRIS KEDSENQRTR MGVVVLKTGW  420
PIEKHAASIY TSAMLEMFSD HIFDSAAYNV IEVVPNKKYF TLHSDATRRH KWSKVHYEIT  480
ISDDGGQYNC ECGLVEHMGM LCCHAIRVML QLGIDKIPKG HILKRRTKDA NDVLPDHLAH  540
LQKDKGSLRS QSYRHVSLHV AALELVAIGD KNIDSYHDVL KYIIDGKKKF DEMYRQTDGR  600
SLQELPATTT TESVLPDPAS QWVNMGSEWS VLEFGDMHHL KLQVMSHFVQ PEFSLCRSQD  660
QM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g38666.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317341.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DNH20.0A0A2K2DNH2_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-56FAR1-related sequence 5