PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g38577.1.p | ||||||||
Common Name | BRADI_1g38577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 180aa MW: 20058.6 Da PI: 11.2675 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 42.8 | 8.9e-14 | 125 | 164 | 37 | 70 |
E2F_TDP 37 e.dvknkrRRiYDilNVLealnliek.....kekneirwk 70 e ++++k+RR+YDi+NVL++lnliek ++k+++rw Bradi1g38577.1.p 125 EsNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWL 164 2599**********************99999999999995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 2.1E-6 | 102 | 165 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-12 | 118 | 165 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-7 | 123 | 164 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-11 | 124 | 164 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MPRRAGHHAS IAPAPAPLHS PAPPPSIRTL SPAIRHRGWE GRFGRLGILR RLRNWCLGGS 60 STLDLIWRAW GRVMCCCGAP PPLSSMAGGG AEVCGSAPTY CKFPNELRRS HLMRLQGCSL 120 ERHAESNMRT KVRRLYDIAN VLSSLNLIEK TQQVDSRKPA FRWLTFPFIL ICINWCMTM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g38577.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375358 | 5e-59 | AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3JKE9 | 1e-127 | A0A0Q3JKE9_BRADI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 5e-17 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g38577.1.p |