PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g38238.1.p | ||||||||
Common Name | BRADI_1g38238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 30812.3 Da PI: 8.8241 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+d + r++lg+f tae+Aa+a+++a+ l+g Bradi1g38238.1.p 34 CKFVGVRQRP-SGRWVAEIKDtT-----HkIRVWLGTFETAEDAARAYDEAACLLRG 84 799*******.7*********33.....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.02E-30 | 34 | 94 | No hit | No description |
Pfam | PF00847 | 4.1E-13 | 34 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-36 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-19 | 35 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.77 | 35 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-28 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MELHFQHPQP QECQQPAKGV RRSSSSTSSS SSKCKFVGVR QRPSGRWVAE IKDTTHKIRV 60 WLGTFETAED AARAYDEAAC LLRGSNTRTN FAVASSPAPA SPQQPDSPLA SRIRTLLTHK 120 KLKKHHTAPR SPVAFTPPYA GNRNASAGNS NGGSASSSIS FAVSGNGVDL ARHAPNPCSH 180 QRVAEESYRT CQLINHFDHP PSWAAALNPA APPVAGSNAH CPEMPQGRMK AEKQEGSASA 240 SPDGAAAMST GFARAQQQVD GFDIGNDPCD SLWDLPPICQ LSCRSLMY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 35 | 91 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g38238.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK368449 | 7e-84 | AK368449.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2073N10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313313.1 | 0.0 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A0Q3H6C1 | 0.0 | A0A0Q3H6C1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G54450.1 | 1e-89 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-24 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g38238.1.p |