PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g38180.2.p
Common NameBRADI_1g38180, LOC100823855
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 356aa    MW: 37485.2 Da    PI: 7.8663
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g38180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822208.22.2e-64151632148
            DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 
                       g++r ptw+ErEnn+rRERrRRaiaakiy+GLRa+Gny+lpk++DnneVlkALc+eAGwvve+DGttyrkg+kp+   +++  g+sas sp+s
  Bradi1g38180.2.p  15 GGTRVPTWRERENNRRRERRRRAIAAKIYTGLRAYGNYNLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGCKPPpqARHDPLGRSASPSPCS 107
                       789***********************************************************************98888999*********** PP

            DUF822  93 slqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148
                       s+q        +sp++sy++sp+sssfps+ s+++i+l  +        +sl+p+l++ls+ +s
  Bradi1g38180.2.p 108 SYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGNnliggvegSSLIPWLKNLSSNPS 163
                       ***........*************************9998899*****99*******9988444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.0E-7015159IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTHGAGGESG GGGLGGTRVP TWRERENNRR RERRRRAIAA KIYTGLRAYG NYNLPKHCDN  60
NEVLKALCNE AGWVVEPDGT TYRKGCKPPP QARHDPLGRS ASPSPCSSYQ PSPRASYNPS  120
PASSSFPSSG SSSHITLGGN NLIGGVEGSS LIPWLKNLSS NPSFASSSKF PQLHHLYFNG  180
GSISAPVTPP SSSPTHTPRI KTDWENQSVQ PPWAGANYTS LPNSTPPSPG HHIAPDPAWL  240
AGFQISSAGP SSPTYNLVSH NPFGIFKEAL ASTSRVCTPG QSGTCSPVMG GAPTHHDVQM  300
ADGATDDFAF GSSSNGNNES PGLVKAWEGE RIHEECASDE LELTLGSSMT RGDPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-261890372444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-261890372444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-261890372444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-261890372444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g38180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563774.10.0protein BZR1 homolog 3
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLI1GY360.0I1GY36_BRADI; Uncharacterized protein
STRINGBRADI1G38180.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.13e-64BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]