PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g38110.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 315aa    MW: 33332.5 Da    PI: 6.267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g38110.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-18104150252
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Bradi1g38110.2.p 104 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 150
                       69****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-21104162IPR016177DNA-binding domain
PfamPF008473.6E-12104150IPR001471AP2/ERF domain
SMARTSM003801.5E-35104167IPR001471AP2/ERF domain
PROSITE profilePS5103222.998104161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-31104162IPR001471AP2/ERF domain
PRINTSPR003675.0E-10105116IPR001471AP2/ERF domain
CDDcd000183.62E-20105163No hitNo description
PRINTSPR003675.0E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MHGAPTTKKR LLLPASFKHP SIHLHDSGIG RLNHNRLGAH SLVICIWHLA MAPEYYEVTS  60
PASSSASPPP SPAGASRGGG SREKRGRRSR GGANNGAAGG RHPTYRGVRM RAWGKWVSEI  120
REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPAAVLNF PELAASLPPP ASAAPHDVQA  180
AAARAAAMDD PAPMPAASHL PVCHNPGPSS SMLGHVDDEQ LEEIIDLPCI SDYDDTAAEV  240
VFGGEFFRDP IADEAWYEYE PAAAWLEPDN YAGNGIAAHD DEMAMSGLGI EPCQCWVQPD  300
GIVASGFDAL LGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1799161972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g38110.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560670.20.0dehydration-responsive element-binding protein 3
TrEMBLA0A0Q3L4E50.0A0A0Q3L4E5_BRADI; Uncharacterized protein
STRINGBRADI1G38110.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-25ERF family protein