PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g36180.2.p
Common NameBRADI_1g36180
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 556aa    MW: 59727.8 Da    PI: 7.0362
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g36180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.59e-891485542373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPil 91 
                       ++l+l+cA+ ++ gdl++a+++ + l  ++sp+gd+  Rla +f++ALa r+  +  +++   ++s +++++      ++  + +f+++ P+l
  Bradi1g36180.2.p 148 RDLVLACADLLHRGDLAAARRAAEILLSTSSPRGDAADRLAYHFARALALRVDAMAGHVVPFASSSGSPRQSsggPGASAGPYLAFNQIAPFL 240
                       6799**************************************************9999998877777776665444445555667******** PP

              GRAS  92 kfshltaNqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                       +f+hltaNqaIl+++ +g++rvHi+D+d+ +G+QWp+Llqa+a+R+      gpp++RiTg g+    ++++l +tg+rL+ fA+++++pf+f
  Bradi1g36180.2.p 241 RFAHLTANQAILDSIpAGARRVHILDLDAAHGVQWPPLLQAIADRAdpalgLGPPEVRITGAGA----DRDALLRTGNRLRAFARSIRLPFHF 329
                       *************994567***************************5555445***********....************************* PP

              GRAS 179 nvl............vakrledl.............eleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                        +l                   +             + ++L +++p+E+laVn+vl lh+l   +     e  ++Lk vk + P vv+v+e+e
  Bradi1g36180.2.p 330 APLllsqstkhqqedS------VagsgsgsshagsgSSQQLvELHPDETLAVNCVLFLHKLG-GQE----ELAAFLKWVKAMAPAVVTVAERE 411
                       ***7655544443330......133333334444443333358899***************8.222....3567******************* PP

              GRAS 246 adhnse.................sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                       ++h ++                  + +r+  a+++y+a+f++lea++p+ s+er  vE+ +lgrei+ +v+  g +    +  le+W ++ ++
  Bradi1g36180.2.p 412 SSHPTAiehpamamgidgreqdeLLPRRVGAAMDHYAAVFEALEATVPPGSRERLAVEQDVLGREIEAAVSGVGGR---WRGGLERWAAAARA 501
                       ***888899*************888899*******************************************99887...57889********* PP

              GRAS 322 aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                        GF + pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W
  Bradi1g36180.2.p 502 TGFAARPLSPFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSW 554
                       ***************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.908121534IPR005202Transcription factor GRAS
PfamPF035143.1E-86148554IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MHMTLLEGND EVQVETMMGF LIWGLRHSIQ SWAINEDPTK GQNMRWLETW ACLHSTNYYS  60
MQAQQCSMGI SHEMWMWWIR VCMHVVIFVL KIILRRSADV MLGSLHSSSS SSDTDTTTNN  120
NNSGGVEAAA QGGIGHALQQ AAAPPSARDL VLACADLLHR GDLAAARRAA EILLSTSSPR  180
GDAADRLAYH FARALALRVD AMAGHVVPFA SSSGSPRQSS GGPGASAGPY LAFNQIAPFL  240
RFAHLTANQA ILDSIPAGAR RVHILDLDAA HGVQWPPLLQ AIADRADPAL GLGPPEVRIT  300
GAGADRDALL RTGNRLRAFA RSIRLPFHFA PLLLSQSTKH QQEDSVAGSG SGSSHAGSGS  360
SQQLVELHPD ETLAVNCVLF LHKLGGQEEL AAFLKWVKAM APAVVTVAER ESSHPTAIEH  420
PAMAMGIDGR EQDELLPRRV GAAMDHYAAV FEALEATVPP GSRERLAVEQ DVLGREIEAA  480
VSGVGGRWRG GLERWAAAAR ATGFAARPLS PFAVSQARLL LRLHYPSEGY LVQEARGACF  540
LGWQTRPLLS VSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4215455425377Protein SCARECROW
5b3h_D1e-4215455425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g36180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560591.20.0protein MONOCULM 1
SwissprotQ84MM91e-163MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0Q3H5H10.0A0A0Q3H5H1_BRADI; Uncharacterized protein
STRINGBRADI1G36180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-66GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]