PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35990.1.p
Common NameBRADI_1g35990, LOC100823833
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 321aa    MW: 33899.1 Da    PI: 8.8502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35990.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.5e-09151198455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  Bradi1g35990.1.p 151 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 198
                       8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-15145216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.33E-10145202No hitNo description
PROSITE profilePS5088814.627147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14147215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRRPSPPPAA GGEIQALAVA PASAAGSSSS TTTTGGGGSF TALLGLPMSQ AMELLLPPSA  60
PPPPTFPSDP SLVDRAARFS AFASSNSPSP TPPPPPPAAK RKADHAADRA SKGKKGKTTA  120
GGSDEKDAGG GEDEKPAYVH VRARRGQATD SHSLAERARR EKINARMELL KELVPGCSKV  180
SGTALVLDEI INHVQSLQRQ VEYLSMRLAA VNPRVDFGGL DSFLTSECGR ITGLNCKSGM  240
DLEQVTWPDM GVHGARHLMQ LQQQFWHGDL AHPHQPPSQW EKRGDVNPPV FSHSSSSLFG  300
YDLASSGQQQ PQPNKLKTEL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35990.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227502.20.0transcription factor bHLH48
SwissprotQ8VZ023e-61BH048_ARATH; Transcription factor bHLH48
TrEMBLI1GXA90.0I1GXA9_BRADI; Uncharacterized protein
STRINGBRADI1G35990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-53bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]