PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g35920.2.p | ||||||||
Common Name | BRADI_1g35920, LOC100827354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 230aa MW: 23936.4 Da PI: 9.9161 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f Ck G++C+FaHg+ Bradi1g35920.2.p 32 KTRMCNKFNTAEGCKWGNKCHFAHGE 57 89**********************96 PP | |||||||
2 | zf-CCCH | 38.9 | 1.5e-12 | 195 | 220 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f++ G C +GdrC+FaHg+ Bradi1g35920.2.p 195 FKTKLCDNFSK-GSCTFGDRCHFAHGE 220 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-14 | 27 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-8 | 30 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.389 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 2.9E-9 | 100 | 170 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 5.8E-14 | 101 | 169 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.236 | 101 | 165 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.2E-10 | 103 | 166 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 4.11E-14 | 103 | 196 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.50E-13 | 103 | 165 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-16 | 193 | 225 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.896 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-8 | 194 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-9 | 194 | 224 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-10 | 195 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTNLGGPAVA TPPGRMPMGP GVPDGPPTPG VKTRMCNKFN TAEGCKWGNK CHFAHGEREL 60 GKPMLLNNSM VPPMGPRPNG HFVPPPMPAP DMVPPSTFGA SATAKISVDA SLAGAIIGKG 120 GVNTKHISRI TGAKLAIRDN EADPNFKNIE LEGTFDQIKY ASSMVTDLIV RIGGNAPPAK 180 NPTRGPHVGG GGNNFKTKLC DNFSKGSCTF GDRCHFAHGE SELRKSVAA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g35920.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563620.1 | 1e-166 | zinc finger CCCH domain-containing protein 44 isoform X2 | ||||
Refseq | XP_010227497.1 | 1e-166 | zinc finger CCCH domain-containing protein 44 isoform X1 | ||||
Swissprot | Q69XQ3 | 1e-132 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0Q3H5C3 | 1e-165 | A0A0Q3H5C3_BRADI; Uncharacterized protein | ||||
TrEMBL | I1GXA2 | 1e-165 | I1GXA2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35920.1 | 1e-165 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-56 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g35920.2.p |
Entrez Gene | 100827354 |