PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g35920.1.p | ||||||||
Common Name | BRADI_1g35920, LOC100827354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 299aa MW: 31103.5 Da PI: 10.2168 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f Ck G++C+FaHg+ Bradi1g35920.1.p 101 KTRMCNKFNTAEGCKWGNKCHFAHGE 126 89**********************96 PP | |||||||
2 | zf-CCCH | 38.4 | 2.1e-12 | 264 | 289 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f++ G C +GdrC+FaHg+ Bradi1g35920.1.p 264 FKTKLCDNFSK-GSCTFGDRCHFAHGE 289 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.9 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.493 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-7 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-14 | 97 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.389 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-8 | 99 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 2.9E-9 | 169 | 239 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 9.8E-14 | 170 | 238 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.236 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.05E-12 | 172 | 234 | No hit | No description |
SuperFamily | SSF54791 | 7.28E-14 | 172 | 265 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 6.7E-10 | 172 | 235 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-16 | 262 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-8 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-9 | 263 | 293 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.896 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-10 | 264 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MDAGRKRAVP EGTNGGGAAK RPRESESFQM GVGSKSKPCT KFFSTAGCPF GSGCHFLHNF 60 PGGHQAVSKM TNLGGPAVAT PPGRMPMGPG VPDGPPTPGV KTRMCNKFNT AEGCKWGNKC 120 HFAHGERELG KPMLLNNSMV PPMGPRPNGH FVPPPMPAPD MVPPSTFGAS ATAKISVDAS 180 LAGAIIGKGG VNTKHISRIT GAKLAIRDNE ADPNFKNIEL EGTFDQIKYA SSMVTDLIVR 240 IGGNAPPAKN PTRGPHVGGG GNNFKTKLCD NFSKGSCTFG DRCHFAHGES ELRKSVAA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g35920.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563620.1 | 0.0 | zinc finger CCCH domain-containing protein 44 isoform X2 | ||||
Swissprot | Q69XQ3 | 1e-170 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | I1GXA2 | 0.0 | I1GXA2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35920.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g35920.1.p |
Entrez Gene | 100827354 |