PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35588.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 335aa    MW: 37509.6 Da    PI: 10.6882
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35588.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.6e-1678169297
                       EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       +k l ++d l++  +++p kf++eh    ++ ++s+t ++ ++ ++ W+v+l  +++++ +++++GW +F  a++L +g ++vF+++g++ f 
  Bradi1g35588.2.p  78 IKLL-QPDDLEK--MRVPDKFVQEHlteTESCPSSQTAIILSPLSKFWRVEL--ERGQSDVLFKGGWARFLMAHDLSQGNILVFRYEGNMVF- 164
                       4444.6777766..79*********99855667999****************..**********************************9999. PP

                       .EEEEE CS
                B3  92 lvvkvf 97 
                         v vf
  Bradi1g35588.2.p 165 -SVEVF 169
                       .66655 PP
2B3474.8e-15243325286
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       fk+ ++ ++lks  l + ++f++++g++++++++l+    s rsW+v ++ + +  +y+ +  Wk+F+++n+LkegD ++F  ++
  Bradi1g35588.2.p 243 FKKQINRYSLKSF-LAVKRTFCSSIGLVSACTIKLQTSMDSTRSWSVPFN-TANTYGYITGPRWKRFCRDNKLKEGDLCTFNIVK 325
                       5777899999998.999***********99977777666888*******4.4444569999********************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-2073174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2174172IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-2074178IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-1675169No hitNo description
SMARTSM010198.2E-1277172IPR003340B3 DNA binding domain
PfamPF023626.0E-1378168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-17239333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-14239333IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955241334IPR003340B3 DNA binding domain
CDDcd100172.62E-7241321No hitNo description
SMARTSM010190.0024243334IPR003340B3 DNA binding domain
PfamPF023623.0E-11244325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAHSARRLRP KFAAPSLSWS CLHKLLAAAH GVGEGWSVVL RRERRGVATV AAFDPACCLA  60
RLCTPRPGVM FKNRPRFIKL LQPDDLEKMR VPDKFVQEHL TETESCPSSQ TAIILSPLSK  120
FWRVELERGQ SDVLFKGGWA RFLMAHDLSQ GNILVFRYEG NMVFSVEVFL QNGCLKEYTR  180
AGALILTDDP NGPRTGTPQS GNELVVATAS KKRKYTKRVV SPNSANKVGS QCKLANTLRK  240
PSFKKQINRY SLKSFLAVKR TFCSSIGLVS ACTIKLQTSM DSTRSWSVPF NTANTYGYIT  300
GPRWKRFCRD NKLKEGDLCT FNIVKTTVWH VVIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35588.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229793.10.0putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL71e-111Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A2K2DMV40.0A0A2K2DMV4_BRADI; Uncharacterized protein
STRINGBRADI1G35587.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Representative plantOGRP10106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-14B3 family protein