PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g35322.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 876aa    MW: 100484 Da    PI: 7.7761
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g35322.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.61.2e-19108199289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        Y +Y +  GF vr+++++   ++ge+ +++fvC+k gk+++ k++       + +r+++ ++rtgC+a++kvk++  +++ v+++e+eHnH+
  Bradi1g35322.2.p 108 HYVDYTRWNGFGVRIDYQRPI-KSGETSRAQFVCYKAGKNKKGKEDtqrlesVVPKRKRNITERTGCQARMKVKLD-GATYIVEHFEEEHNHH 198
                       699*************99988.7888****************9999999998899999******************.9**************8 PP

              FAR1  89 l 89 
                       +
  Bradi1g35322.2.p 199 V 199
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-16108199IPR004330FAR1 DNA binding domain
PfamPF105512.4E-33323415IPR018289MULE transposase domain
PROSITE profilePS509669.545604640IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4608638IPR007527Zinc finger, SWIM-type
SMARTSM005750.001615642IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MLLRPVLHGG PEHVAHHSQT PRLGGAGNHD CLQQTATGVP DTVGTHTHTE HVGGSTSAAE  60
PSLHRSDGEM ADDVEINEDD DDGDDGISAP KKPAVGMRFD NIEATKQHYV DYTRWNGFGV  120
RIDYQRPIKS GETSRAQFVC YKAGKNKKGK EDTQRLESVV PKRKRNITER TGCQARMKVK  180
LDGATYIVEH FEEEHNHHVL KKFNLARYLR SHRHMPREER EFVKLLHGCN LHTSQMMQIL  240
STLHGKLEDF SYTRTDMANF RAALRREHYV MDMKFTLQYS NKLKKEDDDF FYSFELDNED  300
RVINLYWVDA EARRSYKYYS DWISFDTTYL MNKYNMPCAP FIGINNHGQS VQFGCGFMRN  360
EDTGSFVWLF KTFLEAMDGI APVNIITDQD FAMRNGIAEV FPDARHRNCR WHIMKRAQEK  420
LGGFMGRNLE LHADFEDCIN NSWTLQEFEL KWITMIEKYQ VQDNQDLGHL WENRTSWVPA  480
YFMLDFYPFL QSTQRSEGFN AVLKRYVSPS NSIYEFVRQY TVLQEKILGV ERQAEAETTL  540
TVSRKWGFSL IEEQVNLVYT RRMFNRFQEE LQMTSSYHCM RTGVNTYETM SMTGNSGQYG  600
SRTYKLAVDM EADMYSCECY KFDRDGIVCC HILRVMQHEG VRVFPQHYIL KRWTWNVDAA  660
LGPHGTQQLN PTQHEMPENS RKLMRYATRN KGLAEIAKDA CDGQDATKIV ERHMKEMRRE  720
LAALRKRQEK DARARESMGM YRRDRAVPDG STSGAALGST SEAPPVGSAT GATTDGSALG  780
AGTEDHERGG GSVEWTVTDE VSAASSGRAV RDLPMTATKG RPRESRYKSP LDIEPKAPKK  840
RGRCQPYMTK VASLELTYHR LGSFQPYRTK VATIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g35322.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231561.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A2K2DMT20.0A0A2K2DMT2_BRADI; Uncharacterized protein
STRINGBRADI1G35320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-97FAR1-related sequence 5